Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f12r
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 26 2.0
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 26 2.7
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 2.7
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 3.6
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 25 3.6
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 3.6
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 6.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 8.2
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 24 8.2
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 8.2
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 24 8.2
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 80 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 199
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 80 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 199
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 280 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 185
+K+ K + + + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 304 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 212
KRE ++F+K+ K+I I T V +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 331 GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 206
GP ETA ER+QEF + I++++ + V+ + + +
Sbjct: 62 GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 90 PNHNLKNHPQNKSRMYILFT**SYCYASCIVDGRVLMYTYTQINKNITTTVGNTIV 257
P+ NL N + R I SCI+ R L+ YT++ + V NTI+
Sbjct: 297 PDSNLLNQTFSYQRHQIYKEEDVVLARSCIIKARTLIGAYTKVGD--ASVVANTII 350
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 127 DLFWGWFFKL*LGLNVVASERLCAICLYYVY-YRNIP 20
D+ W + LG+ + +C YY+Y Y+ IP
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLCCYYIYSYKLIP 477
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 8.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +2
Query: 56 STKSLTCYHIESQSQLEKPPPE*VK 130
S ++ CY +++ + ++ PPP +K
Sbjct: 557 SISNICCYMMDASTHIDLPPPAIIK 581
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 72 LATTLSPNHNLKNHPQNKS 128
LA++ + NHN +PQN+S
Sbjct: 180 LASSNNKNHNQSKNPQNRS 198
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 2 YAWYNLGNVSVINIV*TYSTKSLTCYHIESQSQLEKPPP 118
Y W+ + VSVI IV T+++ + I+ S+L P
Sbjct: 104 YKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSIP 142
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 45 YKHIAQSLSLATTLSPNHNLKNHPQNKSRM 134
YK +S TL H++K HP NKSR+
Sbjct: 428 YKDYPTVVSRIRTL---HHVKLHPDNKSRL 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,585
Number of Sequences: 5004
Number of extensions: 35123
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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