Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f12r
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.60 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   9.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   9.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IVCICFRIFANSCFLSLFCLAVSLTGPFSFLIFNANK-SAK 371
           IVC   R  A  CF  ++   ++ T   S  IFNA+K SAK
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRIS-RIFNASKHSAK 758


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 293 KTRIRENAKTNTYDCVTNCRCNI 225
           K +IR    T  Y+C   C C+I
Sbjct: 460 KHKIRVPPGTPIYECNKRCNCDI 482


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 325 VKETARQKRERKQEFAKMRKQIHTIVLP 242
           +KET  +K++ KQ  +    Q    +LP
Sbjct: 534 MKETEEEKKKTKQSLSPSENQSKMEILP 561


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 231 TTTVGNTIVCICFRIFANSCFLSLF 305
           ++T G TIV     IF ++ F+S F
Sbjct: 562 SSTSGATIVNYSIMIFLSAVFISFF 586


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -2

Query: 247 LPTVVVIFLLICVYVYIKTR 188
           + T+V++   +C+  Y+  R
Sbjct: 1   MKTIVILLFTLCIVSYMMVR 20


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 312 LGRKGKENKNSRKCENKYI 256
           LG++ K+N N R    KY+
Sbjct: 90  LGKEWKKNLNLRDSVTKYL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,573
Number of Sequences: 438
Number of extensions: 2711
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)