Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f12f
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   1.4  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    26   2.5  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   3.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.3  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   4.3  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   4.3  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   4.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   5.7  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   9.9  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    24   9.9  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    24   9.9  

>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 359 AICLYYVYYRNIPSCTKH 412
           A+CL  +++RN  +C K+
Sbjct: 75  AVCLMNIFFRNSENCFKY 92



 Score = 21.8 bits (44), Expect(2) = 1.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 170 LPTVVVIFLLICVYVYIKTRPSTMHD 247
           L  + ++FLL+  Y++     + MHD
Sbjct: 27  LSLIGIVFLLVLSYLFSIEAETLMHD 52


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 337 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 218
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 337 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 218
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 232
           +K+ K +  +      + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 113 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 205
           KRE  ++F+K+ K+I  I   T V   +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 86  GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 211
           GP  ETA    ER+QEF  +   I++++   + V+ + +  +
Sbjct: 62  GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 327 PNHNLKNHPQNKSRMYILFT**SYCYASCIVDGRVLMYTYTQINKNITTTVGNTIV 160
           P+ NL N   +  R  I          SCI+  R L+  YT++     + V NTI+
Sbjct: 297 PDSNLLNQTFSYQRHQIYKEEDVVLARSCIIKARTLIGAYTKVGD--ASVVANTII 350


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 421 HLDMLGTTWNVSVINIV*TYSTKSLTCYHIESQSQ 317
           H D++   W  S+     T  TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 290 DLFWGWFFKL*LGLNVVASERLCAICLYYVY-YRNIP 397
           D+   W   + LG+  +       +C YY+Y Y+ IP
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLCCYYIYSYKLIP 477


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 361 STKSLTCYHIESQSQLEKPPPE*VK 287
           S  ++ CY +++ + ++ PPP  +K
Sbjct: 557 SISNICCYMMDASTHIDLPPPAIIK 581


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 345 LATTLSPNHNLKNHPQNKS 289
           LA++ + NHN   +PQN+S
Sbjct: 180 LASSNNKNHNQSKNPQNRS 198


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 372 YKHIAQSLSLATTLSPNHNLKNHPQNKSRM 283
           YK     +S   TL   H++K HP NKSR+
Sbjct: 428 YKDYPTVVSRIRTL---HHVKLHPDNKSRL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,599
Number of Sequences: 5004
Number of extensions: 36516
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)