Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f12f
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    30   0.71 
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    28   2.9  
U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    27   6.6  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    27   6.6  

>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 134 FAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHD 247
           F    K I  +   T+  IF+L+C Y++ K   +  H+
Sbjct: 224 FTASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHE 261


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 98  ETARQKRERKQEFAK-MRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHDA*Q*LYYVN 274
           ET  ++  + +E A+ MR +I T+  P++     +  VY  +K     +  A   +  + 
Sbjct: 147 ETTEKRSSKVKEMARFMRSKITTVHTPSIFSCIRMYSVYSIVKMLYLIIAIAQFVILAIF 206

Query: 275 RIYILDLFWGW 307
                D+FWGW
Sbjct: 207 LDQEKDMFWGW 217


>Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical
           protein C43C3.2 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 252 YASCIVDGRVLMYTYTQINKNITTTVGNTIVCICFRIFANS 130
           + +C++   +L+Y +++++  IT T  + I+  C R F  S
Sbjct: 180 FVTCVMLSPILLYAHSKVHFIITETYRHLIMQKCLRFFEGS 220


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 361 STKSLTCYHIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRR 233
           S++S  C    S S+ EKP PE    V  +Y  KL    VH +
Sbjct: 185 SSESSHCSASSSLSKTEKPEPENSNFVNELYYCKLARSQVHHK 227


>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 16  CKTYIHIFVYFCGFVSIEDEEAEGSRQRDS*AEKGKKTRIR-ENAKTNTYDCVTNCRCNI 192
           C+T++   +    FVS +D   +  R R+  A K ++ R + E      Y     C C+ 
Sbjct: 315 CQTFVFGALLEYAFVSYQDSVRQNDRSREKAARKAQRRREKLEMVDAEVYQ--PPCTCHT 372

Query: 193 F 195
           F
Sbjct: 373 F 373


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 16  CKTYIHIFVYFCGFVSIEDEEAEGSRQRDS*AEKGKKTRIR-ENAKTNTYDCVTNCRCNI 192
           C+T++   +    FVS +D   +  R R+  A K ++ R + E      Y     C C+ 
Sbjct: 315 CQTFVFGALLEYAFVSYQDSVRQNDRSREKAARKAQRRREKLEMVDAEVYQ--PPCTCHT 372

Query: 193 F 195
           F
Sbjct: 373 F 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,606
Number of Sequences: 27780
Number of extensions: 210666
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)