Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f07r
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 31 0.29
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 30 0.51
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 2.7
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 27 2.7
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 6.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.3
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 6.3
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 8.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 8.3
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 30.7 bits (66), Expect = 0.29
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Frame = -2
Query: 833 VTSAVINSLKNNASGQPFDGPMGIS------VALSPATTTVTMSKSMITNASFRTKKLPD 672
VT +S +++S QP + + I+ + S +TTV++S S++TN + L D
Sbjct: 1442 VTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVSISFSVLTNLDNKEVNLED 1501
Query: 671 DIPIQAGQATTAESTDVLTSITEE------GESETAPI--QRGIIARNSKAK 540
+P A+ + DV TEE S T+PI GI A N K K
Sbjct: 1502 AVPASHRSASGIVNFDVEKGKTEEVFLENWNSSLTSPIPVSVGIDAFNEKKK 1553
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 196 ITSGLVYSNYTELTCMAAKRGVVSISNESGV-ICERVSEFSELLCTDVIDIFSSFEVPLV 372
+ +GL + +C+ + + SI ++G+ IC++V++ S L+ +FSS +PL+
Sbjct: 89 LEAGLAQVTFGVGSCLGITKFIYSIFKQTGIWICKQVADESSLIEMLKKPVFSSVVLPLL 148
Query: 373 STELSAVFCKP 405
L + P
Sbjct: 149 PCMLVRFYEAP 159
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 755 ALSPATTTVTMSKSMITNASFRTKKLPDDIPIQAGQATTAESTDVLTSITEEGESE 588
+LSPA +TVT++ ++ T A ++K +DI + +E ++ +S + ES+
Sbjct: 969 SLSPARSTVTITHNIATEAKKKSKSAANDILHLFKKKAKSEQSNAKSSSSSIKESK 1024
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -2
Query: 461 ESSKGIWNSLSGGSGDMVDGLQKTADSSVETNGTSKDEKISMTSVHNSSENSDTRSHITP 282
ESS +S S S + K +DSS +N + ++ S S + SE+S S T
Sbjct: 246 ESSSEDSDSSSSSSDSESESSSKDSDSS--SNSSDSEDDSSSDSSDSESESSSEDSDSTS 303
Query: 281 DSLDIDTT 258
S D D++
Sbjct: 304 SSSDSDSS 311
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 392 TADSSVETNGTSKDEKISMTSVHNSSENSDT-RSHITPDSLDIDTTPRFAAMQV 234
+ DS+ ++ G DE+ S+ SV N ++S+T ++ D L + PR+ Q+
Sbjct: 312 STDSNTDSFGLESDER-SLPSVSNDLKSSETLKNPRNDDLLTLQQPPRYPHSQM 364
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 664 GISSGSFLVRNDAFVIIDLDMVT 732
G+++GSFLVRN + + +D++T
Sbjct: 226 GLNAGSFLVRNSRSIALLMDLLT 248
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 790 DNHLMGQWVLVLHCHQQLQRLPCPNL**QMHHSALRNCQTIFQYKPDKRQQPSPP 626
+ H +G +V H Q P L HH + R Q Q P P PP
Sbjct: 190 NTHNLGSFVTNPHADSQECPTPQSLLMRASHHMSERGSQQAHQTTPQNHSLPHPP 244
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -2
Query: 740 TTTVTMSKSMITNASFRTKKLPDDIPIQAGQATTAESTDVLTSITEEGESETAPIQRGII 561
T T SKS+ T+ + + + + T +TD T+ T + S ++
Sbjct: 260 TKLPTSSKSLTTSKTTASGHITKGVMEALSTNDTTNTTDDATNTTSDSSSSSSASASSSS 319
Query: 560 ARNSKAKLSSFPV 522
+ +S A L S PV
Sbjct: 320 SSSSAASLVSQPV 332
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 340 DIFSSFEVPLVSTELSAVFCKPSTMSPLPPLRE 438
+I S +VP+ + S+ K ST SP PP E
Sbjct: 648 NILKSTQVPVTPKQKSSTANKGSTSSPSPPSSE 680
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 440 NSLSGGSGDMVDGLQKTADSSVETNGTSKDEKISMTSVHNSSENSDTR 297
N LS G ++ LQK +S+ +S+DE I+ ++ SS + T+
Sbjct: 49 NKLSSGPQHLLSHLQKEENSNTSKASSSEDE-IAPKYLYPSSPSKSTK 95
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 456 GFLQYHFLFVTLIFSILCFF 515
GFL + F FV L+FSI +F
Sbjct: 488 GFLTFAFSFVFLLFSIWLYF 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,274
Number of Sequences: 5004
Number of extensions: 70935
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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