Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f07r
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142...    29   6.6  
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     29   6.6  

>12_02_1092 -
           26011445-26012071,26012826-26014022,26014083-26014286,
           26014316-26014385,26014440-26014479,26015566-26015632,
           26015718-26015740,26017985-26018081,26018553-26018614,
           26018913-26019297,26019924-26020007,26020383-26020467,
           26020579-26020790,26020881-26021030
          Length = 1100

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 214 YSNYTELTCMA-AKRGVVS-ISNESGVICERVSEFSELLCTDVIDIFSSFEVPLVSTELS 387
           +S+   L CM     G+ S +  E G +   + +  E +CT ++ I  +FE    + +  
Sbjct: 392 FSHLVNLDCMRYCTTGLPSDVLVEVGEMSFHLHKMHEAICTTLLVIMENFEEMSFNEQPQ 451

Query: 388 AVFCKPS 408
             FC PS
Sbjct: 452 LTFCTPS 458


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -2

Query: 458 SSKGIWNSLSGGSGDMVDGLQKTADSSVETNGTSKDEKISMTSVHNSSENSDTRSHITPD 279
           SS   W+  + GSG M  G+   A SS  T+ T++    S TSV  ++  S + +    +
Sbjct: 364 SSSSSWSGSNSGSGTM-SGID--APSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSN 420

Query: 278 SLDIDTTP 255
           S    T P
Sbjct: 421 SNSGSTMP 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,329,531
Number of Sequences: 37544
Number of extensions: 427664
Number of successful extensions: 1174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)