Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f07f
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    29   1.00 
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   4.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   7.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   7.0  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.3  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   9.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   9.3  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 406 NLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIY--N 579
           N+F  E++   Y C  +    + ++L+    Q F F    EI+ + F+ Q  P L+   N
Sbjct: 5   NVFRLEEKR--YKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKN 62

Query: 580 YLSSVAQ 600
           Y+SS  Q
Sbjct: 63  YVSSELQ 69


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 403 FNLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIYNY 582
           F L     E +  NC   +   ++  +EN     F +Y S + Q+    L F+  LI++ 
Sbjct: 292 FTLIPTYQEVMASNCSKYDSTLMLTFIENHDLYRFPYYTSDQSQIMG-ALSFV--LIWDG 348

Query: 583 LSSVAQGKKKTY 618
           + S+  G+++ +
Sbjct: 349 IPSIFYGQEQGF 360


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 754 PLKKEAHDILMIELKMEV*MTQPSVFHFHLQLQSCICQ 641
           PLK+E H I + ++ + +  T+ SVF +H QL  CI Q
Sbjct: 418 PLKEE-HKIFLSKVLIPLHQTK-SVFLYHPQLTYCIVQ 453


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   TNLCYKINSLLGLFDGNAWSEVM 75
           T++ Y INSL+ + D  AW  V+
Sbjct: 275 TDVAYLINSLVAIHDYGAWDTVL 297


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 670 HLQLQSCICQLAMFLCT 620
           H   QSC CQ   F+C+
Sbjct: 625 HFSFQSCACQTLFFICS 641


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 180 NETTPLNVISRDPPKSPLKK 239
           ++  PL+V  R PPK PL+K
Sbjct: 294 SQQLPLHVSPRKPPKPPLRK 313


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 158 TDTKQLINQRYYTFKPEETLNRQNKTNHITSLH 60
           TDT Q+I+ R   F+    L +QN+ N ++++H
Sbjct: 547 TDTDQIISSRLVVFRNIRELQQQNQ-NLLSAVH 578


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 140 INQRYYTFK--PEETLNRQNKTNHITSLHAFPSKSP 39
           I Q YYT    PEE  N   +TN +  +H F +  P
Sbjct: 92  ICQSYYTVMEAPEEVWNAHYQTNVLGPIHVFKAFYP 127


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 176  PYLCAFTDTKQLINQRYYTFKPEETLNRQNKTNHITSLHAFPSKSPNKLLIL 21
            P L  + + K+ IN  ++       L  +   N +TSL  F   SPN  L L
Sbjct: 1867 PNLLIYDEDKKFINTEHF-------LGSKVNLNSVTSLGNFNGSSPNSFLFL 1911


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +1

Query: 301 LITEWLNEYTSLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQLVQI 480
           ++ EW  EY +  +N++       +   E  T   NL     ET     E EN       
Sbjct: 210 IVWEWKEEYHNRIKNQMSRLGGSFDWTREAFTMDENLSRAVVETFVRLHE-ENIIYRANR 268

Query: 481 LENVCTQLFSFYRSKEIQ 534
           L N CT L +   + E++
Sbjct: 269 LVNWCTALQTTLSNLEVE 286


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 331 SLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQ 468
           SL   E      EHE  HE    +  L+     TV Y C    DA+
Sbjct: 145 SLSSGETMLQFPEHEEQHECNREMEQLYESASSTV-YPCSFWEDAE 189


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 529 IQLQRFTLQFIPTLIYNYLSSVAQGKKKTYRCIETLLIGIYNFEVVDE 672
           +Q +R ++Q  P  I +  +   + K    RCI TL+  +  F+VVD+
Sbjct: 38  LQSRRASMQETPWTIKDSFN--VETKDVVQRCIHTLIPTVNFFDVVDD 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,095
Number of Sequences: 5004
Number of extensions: 67860
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)