Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f07f
         (785 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    27   0.66 
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   2.7  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   3.5  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    24   4.6  

>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 0.66
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 230 WTFWRIPRNYVQRRCFIFPYLCAFTDTKQLINQRYYTFKPE 108
           W FW++  N     C++   L       Q+ +++  TFKPE
Sbjct: 55  WKFWKLEPNDAVTHCYVKCTLAGL----QMYDEKTNTFKPE 91


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 304 ITEWLNEYTSLQENEVQSFAAEHEHNH-EIATA 399
           + +WL +    QE++       H H+H E+ TA
Sbjct: 636 VEKWLQQEEQQQEDDHHHHQQHHHHHHAEVTTA 668


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 282 FYIINLILSCASIEIFSV 229
           FY +NLI+ C  I   SV
Sbjct: 241 FYTVNLIIPCVGISFLSV 258


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 282 FYIINLILSCASIEIFSV 229
           FY +NLI+ C  I   SV
Sbjct: 254 FYTVNLIIPCVGISYLSV 271


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,282
Number of Sequences: 2352
Number of extensions: 15654
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)