Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f06r
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   1.5  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   4.7  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   8.2  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 756 FKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTRK 619
           FKF P W+F  S  A + +   +  +   CT    C K  L+S ++
Sbjct: 454 FKFTPLWIFESSDLAALDIAWTADNSLILCTRNGTCWKRELRSKKR 499


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 NGYRWHLNQHILDSCFTLSNYNTF 190
           NGYR+HL +  L S    + Y TF
Sbjct: 179 NGYRYHLTRDALGSACYFTIYETF 202


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 25/90 (27%), Positives = 35/90 (38%)
 Frame = -2

Query: 660 PRLCKKPSLKSTRKAPKXXXXXQWALQVTLHSLMSHQYLPSMLIGHL*PQSLPTESLTSM 481
           P +  KPSL+S    PK               L +H  LP + IG    Q L  ++  S+
Sbjct: 542 PSILHKPSLESASSTPKISSCSSTPKPFN-SKLRAH--LPPLSIGSPAVQPLANDNYDSL 598

Query: 480 PYTVGRMMNKFSAHANNERNSKKFLYCILD 391
               G  M  F+ +  N  N K  L   +D
Sbjct: 599 GVR-GLNMELFNDYPGNMHNIKSVLSLEID 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,819
Number of Sequences: 5004
Number of extensions: 68228
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)