Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f06r
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0620 + 26656072-26656417,26656585-26657396 50 3e-06
04_04_0619 + 26652923-26653267,26653440-26654273 47 2e-05
11_01_0750 - 6315126-6315896,6316371-6316784 44 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 1e-04
11_02_0012 - 7346282-7347136,7347234-7347593 43 4e-04
11_01_0771 + 6453130-6454488 42 5e-04
01_06_0824 - 32243495-32244319,32244449-32244859 40 0.003
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 39 0.005
01_01_1152 + 9170628-9171899 38 0.008
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.014
05_06_0044 - 25150322-25151260 36 0.043
11_02_0011 - 7337618-7338496,7338596-7338991 34 0.17
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 29 6.5
04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139 28 8.6
04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779 28 8.6
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 49.6 bits (113), Expect = 3e-06
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNEE 620
VPKFK +++D L +LG+ A F+ + L+++ N P LYVS QK +EV+EE
Sbjct: 264 VPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDEE 323
Query: 619 GXXXXXXXXXXXXXXXAFLDEPPVP---SFDADRPFVAAI 509
G + +PP P SF A+ PF+ AI
Sbjct: 324 GTTAVEAMYSPSSPGYSPGYQPPRPPPMSFVAEHPFMFAI 363
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDN----DEPLYVSKAVQKAFIEVN 626
VPKFK +E+D L KLG+ A F+ + L+++ + E LYVS QK +EV+
Sbjct: 271 VPKFKFSSELDARGALAKLGLGAPFDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVD 330
Query: 625 EEGXXXXXXXXXXXXXXXAFLDEP-PVP-SFDADRPFVAAI 509
EEG + + P P P SF A+ PF+ AI
Sbjct: 331 EEGTTAVEATYSCCSPTYSGPESPKPRPMSFVAEHPFMFAI 371
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = -1
Query: 805 VRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQN--SGLTKILDNDEPLYVSKAVQKAFIE 632
V ++VP FKI +ID+ L +G++ F R+ S + K D+ PL++S + KA +E
Sbjct: 280 VGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 631 VNEEG 617
V+++G
Sbjct: 340 VDQKG 344
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNEE 620
+PKFKI + +L LG+ F+ + + LT+++D+ E L+VS K+F+EVNEE
Sbjct: 356 LPKFKISFGFEASDLLKSLGLHLPFSSE-ADLTEMVDSPEGKNLFVSSVFHKSFVEVNEE 414
Query: 619 G 617
G
Sbjct: 415 G 415
Score = 38.3 bits (85), Expect = 0.008
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDND--EPLYVSKAVQKAFIEVNEE 620
+PKFKI +L LG+ +F + L +++D+ + L+VS K+FIEVNEE
Sbjct: 608 LPKFKISFGFGASGLLKGLGLPLLFGSEVD-LIEMVDSPGAQNLFVSSVFHKSFIEVNEE 666
Query: 619 G 617
G
Sbjct: 667 G 667
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 42.7 bits (96), Expect = 4e-04
Identities = 29/91 (31%), Positives = 43/91 (47%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNEEGX 614
VP+FK+ ++ +VL +GI A F+ L+ ++D E + V K + +A +EVNEEG
Sbjct: 292 VPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDG-ELVVVEKVMHRAVVEVNEEGT 350
Query: 613 XXXXXXXXXXXXXXAFLDEPPVPSFDADRPF 521
L P F AD PF
Sbjct: 351 EAAAATACTMKFLCLTLTSP--VDFVADHPF 379
>11_01_0771 + 6453130-6454488
Length = 452
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE---PLYVSKAVQKAFIEVNE 623
VPKFK+ ++ L +LG++ F+ + + L+ ++++D PL+V KA IEVNE
Sbjct: 338 VPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIEVNE 397
Query: 622 EG 617
EG
Sbjct: 398 EG 399
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 39.9 bits (89), Expect = 0.003
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Frame = -1
Query: 883 GLDGILQELAXGYDLTAELDKMXSTKVRV---TVPKFKIETEIDLLQVLPKLGIQAIFNR 713
GL +L++L E + KV V VP+F + + + + L +LG++ F
Sbjct: 259 GLPDMLRKLCSDPAALIESSAALTEKVPVGAFMVPRFTLSYKTNAAETLRQLGLRLPFEY 318
Query: 712 QNSGLTKILDND---EPLYVSKAVQKAFIEVNEEGXXXXXXXXXXXXXXXAFLDEP-PVP 545
+ L++++++ E + VS ++F+EVNEEG A P V
Sbjct: 319 PGADLSEMVESSPEAEKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVV 378
Query: 544 SFDADRPFVAAI 509
F AD PF+ I
Sbjct: 379 DFVADHPFMFLI 390
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.1 bits (87), Expect = 0.005
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNEE 620
+PKFKI + +L LG+Q F+ + + LT ++ + E L+VS K+F++V+EE
Sbjct: 148 LPKFKISFGFEASDLLKILGLQLPFSSK-ADLTGMVGSPERHNLFVSSLFHKSFVQVDEE 206
Query: 619 GXXXXXXXXXXXXXXXAFLDEPPVPSFDADRPFVAAI 509
G +F P F AD PF+ I
Sbjct: 207 G----TEAAAASAAVVSFRSAPVTVDFVADHPFLFLI 239
>01_01_1152 + 9170628-9171899
Length = 423
Score = 38.3 bits (85), Expect = 0.008
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = -1
Query: 802 RVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNE 623
R+ VPKFK + + + KLG+ F + ++ + L++++ +A IEV+E
Sbjct: 311 RLMVPKFKFSFKFEAKSDMRKLGVTRAF--AGGDFSGMVTGGDGLFIAEVYHQATIEVDE 368
Query: 622 EGXXXXXXXXXXXXXXXAFLDEPPVPSFDADRPFVAAI 509
G + L PPV F ADRPF+ A+
Sbjct: 369 LGTVAAASTAVVMMQKGSSL--PPV-DFVADRPFLFAV 403
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.5 bits (83), Expect = 0.014
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = -1
Query: 883 GLDGILQELAXGYDLTAELDKMXSTKV-RVTVPKFKIE-TEIDLLQVLPKLGIQA---IF 719
GL G+L + + E V R VPKFK+ + VL LG++ +F
Sbjct: 181 GLPGLLDRITASPEFVDEHLPPGCVPVGRFRVPKFKLAFCHYGIADVLRGLGLRLPFDMF 240
Query: 718 NRQNSGLTKILDN-DEPLYVSKAVQKAFIEVNEEG 617
+ SG+ D D ++VS + K +EVNEEG
Sbjct: 241 AAEMSGIAVEGDGEDAAMFVSSVIHKVVVEVNEEG 275
>05_06_0044 - 25150322-25151260
Length = 312
Score = 35.9 bits (79), Expect = 0.043
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = -1
Query: 793 VPKFKIETEIDLLQVLPKLGIQAIF--NRQNSGLTKILDNDEPLYVSKAVQKAFIEVNEE 620
+PKF++ +++ ++L + G+ F NS +LD + VS + + F+ VNEE
Sbjct: 198 IPKFEVSLKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEE 257
Query: 619 GXXXXXXXXXXXXXXXAFLDEPPVPSFDADRPFV 518
G + + + F AD PF+
Sbjct: 258 GTVAAAGTVGEIMGFA--MPDDQIVDFVADHPFL 289
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 33.9 bits (74), Expect = 0.17
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = -1
Query: 883 GLDGILQELAXGYDLTAELDKMXSTKVR----VTVPKFKIETEIDLLQVLPKLGIQAIFN 716
GL ++ ++A ++ L T+ R + VP+FK+ + VL +G+ A F+
Sbjct: 274 GLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGVLQGMGVTAAFD 333
Query: 715 RQNSGLTKILDNDEP----LYVSKAVQKAFIEVNEEG 617
+ L+ + + + L V + +A +EVNEEG
Sbjct: 334 AGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEG 370
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 829 LDKMXSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNR 713
L ++ V++ +I+ I+ ++ LPK G+Q +FNR
Sbjct: 174 LQRLRGKDADVSIEAAEIKEFIETIENLPKAGVQDLFNR 212
>04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139
Length = 130
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 832 ELDKMXSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE 674
+ DK+ K+RV PK ++ D + +L + + R +S + ILD E
Sbjct: 48 DADKLTDVKIRVDPPKLLVQAHGDQSEDQEQLSTRLGYGRVHSIIENILDKCE 100
>04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779
Length = 130
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 832 ELDKMXSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE 674
+ DK+ K+RV PK ++ D + +L + + R +S + ILD E
Sbjct: 48 DADKLTDVKIRVDPPKLLVQAHGDQSEDQEQLSTRLGYGRVHSIIENILDKCE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,212,687
Number of Sequences: 37544
Number of extensions: 435180
Number of successful extensions: 1029
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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