Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f06f
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    32   0.100
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   2.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.8  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.8  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   3.8  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   6.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   6.6  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   8.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 31.9 bits (69), Expect = 0.100
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 417  KEGDYELDPKLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 566
            K+G   L+PK+  + V  + +++EK++   FD+     GL++ +  N+ N  +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +3

Query: 417 KEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 596
           + G Y   P  K     ++    +  NF         I KWV+    + +K + SE S D
Sbjct: 21  RSGHYLYKPNGKTSCCSLYTIRLDSYNFKIAKEQKKAIKKWVKYVNGKPLKPMKSEISTD 80


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 393  NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 497
            + ++  Y+K+G +EL   +  D   V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 596 IEAVFTQEIFNAFICFIFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKF 444
           ++ +   EI  A I FI +     A  CG  ++ NF  + I Y+D VL KF
Sbjct: 10  LQIILCTEIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 120 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 281
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 746 EIIFLVHHRNINCRFGVNIE 687
           E++ ++H RN+N  FGV+++
Sbjct: 81  EVVCILHDRNLNRVFGVDVD 100


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 138 SMDSKALSSAITKFSAKFCNELDKKKNVVS 227
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 378 KGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTN 557
           K V FNV   IYI + D + +  L     ++ D   +  +      A   I++     TN
Sbjct: 105 KEVLFNVHGVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTN 164

Query: 558 ERIK 569
           +R+K
Sbjct: 165 DRVK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,841
Number of Sequences: 5004
Number of extensions: 58358
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)