Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f05r
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543...    31   1.5  
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594     30   2.7  
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901           29   3.5  
09_06_0287 + 22047404-22048409,22048754-22049967                       29   4.7  

>06_03_0375 +
           20052687-20053214,20053943-20054110,20054272-20054354,
           20054541-20054610,20054973-20055077
          Length = 317

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 600 SSPPSHCTHTGALLLGSHYANFIAI 526
           +S P H TH   LLL  HY NF A+
Sbjct: 2   ASSPRHSTHHPTLLLRRHYPNFCAL 26


>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
          Length = 323

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 543 RNDYPTGGPLYECSGRAGSTRRDAPSP 623
           R D P  G  +EC GRAG   RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147


>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
          Length = 623

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 767 PSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVSEGWTR 615
           P  +  P     L SV+ P + CCS+T        GG+  +  + S G T+
Sbjct: 92  PVLTAKPATSISLRSVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142


>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 702 PGRRCCHAHQPRSACWVTRLGGQHLSPTSRLGYGADCRA 818
           P    C A   RSAC  +    +++S ++R GY  DC A
Sbjct: 284 PVNSTCPADAARSACKSSHSSCRNVSSSARAGYVCDCDA 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,059,061
Number of Sequences: 37544
Number of extensions: 610427
Number of successful extensions: 1871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)