Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f03f
         (606 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-580|AAF51128.1|  757|Drosophila melanogaster CG3277-PA,...    31   1.6  
AE014134-579|AAN10388.2|  808|Drosophila melanogaster CG3277-PB,...    31   1.6  

>AE014134-580|AAF51128.1|  757|Drosophila melanogaster CG3277-PA,
           isoform A protein.
          Length = 757

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 569 NIATVIYSPKKKTRKLRNKYANY*LKK--MGRTNFLCKQKNKNFVYLHVNVQNMHFSVPK 396
           N+ + + + +K+  KLRN+ ANY   +  M RTN     K+++  Y+ +   +    +P+
Sbjct: 461 NLLSYLRTVRKEASKLRNRNANYTSCRPIMTRTNSTSSPKSQSVNYIELKASSQTIEMPQ 520


>AE014134-579|AAN10388.2|  808|Drosophila melanogaster CG3277-PB,
           isoform B protein.
          Length = 808

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 569 NIATVIYSPKKKTRKLRNKYANY*LKK--MGRTNFLCKQKNKNFVYLHVNVQNMHFSVPK 396
           N+ + + + +K+  KLRN+ ANY   +  M RTN     K+++  Y+ +   +    +P+
Sbjct: 512 NLLSYLRTVRKEASKLRNRNANYTSCRPIMTRTNSTSSPKSQSVNYIELKASSQTIEMPQ 571


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,069,496
Number of Sequences: 53049
Number of extensions: 464753
Number of successful extensions: 1417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)