Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f01f
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical pr...   134   5e-32
AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical...   134   5e-32
Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical p...    46   3e-05
Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    29   4.4  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore...    28   7.7  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    28   7.7  

>Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  134 bits (325), Expect = 5e-32
 Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 1/191 (0%)
 Frame = +1

Query: 148 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 327
           F+GLGNMGG MA NL+K G  +  YD +K  +      G   A              ++L
Sbjct: 6   FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65

Query: 328 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 507
            S+  V  VY G+ G+    + G+L +DSSTID  V  ++   A      + DAP+SGGV
Sbjct: 66  PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125

Query: 508 MGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMA 684
            GAQ ATL FM G G    F+R+  +L +MG    + G +G+G  AK+ NNML+GI  +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185

Query: 685 TAECMNMGIKM 717
            AE MN+GI M
Sbjct: 186 VAETMNLGISM 196


>AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  134 bits (325), Expect = 5e-32
 Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 1/191 (0%)
 Frame = +1

Query: 148 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 327
           F+GLGNMGG MA NL+K G  +  YD +K  +      G   A              ++L
Sbjct: 6   FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65

Query: 328 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 507
            S+  V  VY G+ G+    + G+L +DSSTID  V  ++   A      + DAP+SGGV
Sbjct: 66  PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125

Query: 508 MGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMA 684
            GAQ ATL FM G G    F+R+  +L +MG    + G +G+G  AK+ NNML+GI  +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185

Query: 685 TAECMNMGIKM 717
            AE MN+GI M
Sbjct: 186 VAETMNLGISM 196


>Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
 Frame = +1

Query: 133 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 297
           + ++A +GL  MG  +  N+   GFTV  ++ +     D L N A    +  A+SI    
Sbjct: 3   EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62

Query: 298 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 477
                   ++   K    V +  D +V H ++G ++ID    +     +       KG+ 
Sbjct: 63  KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122

Query: 478 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSGQV 639
           F    VSGG  GA+    + M GG  + +     + + + AK     C    G  GSG  
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181

Query: 640 AKLTNN 657
            K+ +N
Sbjct: 182 VKMVHN 187


>Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
 Frame = +1

Query: 133 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 297
           + ++A +GL  MG  +  N+   GFTV  ++ +     D L N A    +  A+SI    
Sbjct: 3   EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62

Query: 298 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 477
                   ++   K    V +  D +V H ++G ++ID    +     +       KG+ 
Sbjct: 63  KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122

Query: 478 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSGQV 639
           F    VSGG  GA+    + M GG  + +     + + + AK     C    G  GSG  
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181

Query: 640 AKLTNN 657
            K+ +N
Sbjct: 182 VKMVHN 187


>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 136 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 261
           + +A LGLG +G  +A  L   G  V G+DP      A AKN
Sbjct: 146 RTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKN 187


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAK 258
           +NVA +G G MG  +A      GF V   D +K AL+ A K
Sbjct: 12  RNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMK 52


>Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical
           protein Y57G11C.11a protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 157 LGNMGGFMAANLVKKGFTVRGYDPSKDALNAA 252
           +G+ GG ++  L + GF V G D +K A+ AA
Sbjct: 82  VGSGGGLLSIPLARSGFDVTGIDATKQAVEAA 113


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 635  CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 456
            C E ICPQ     P  +  GR  +    +PPA  +R         P T  +  P+P S+ 
Sbjct: 991  CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049

Query: 455  IGKICLGT 432
              +  + T
Sbjct: 1050 PRQFAVNT 1057


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 668 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 543
           P N LL+  A+     CP+ NC   ITL   RD   +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 304 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 209
           L+ RL++W  W+   +S P R+ + W+ R+  +
Sbjct: 484 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 516


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 304 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 209
           L+ RL++W  W+   +S P R+ + W+ R+  +
Sbjct: 481 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 513


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 304 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 209
           L+ RL++W  W+   +S P R+ + W+ R+  +
Sbjct: 488 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 520


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 456 YREDLFGNIRIYCTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYG--NDHVDSINGCSN 283
           Y + + G   IY    D K  F  +S+   +A+ H +      + G   D  + ING +N
Sbjct: 261 YDDSVTGQDGIYTASADDKL-FVELSYR--YARAHTKMWKTGRRCGLSADGDNFINGITN 317

Query: 282 GVGWRH 265
           G GW H
Sbjct: 318 GAGWYH 323


>AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 499 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 672
           GG+ G +    AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 673 TGMAT 687
              AT
Sbjct: 325 PQCAT 329


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 499 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 672
           GG+ G +    AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 673 TGMAT 687
              AT
Sbjct: 325 PQCAT 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,380
Number of Sequences: 27780
Number of extensions: 424431
Number of successful extensions: 1143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)