Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e23f
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   3.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   4.5  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.5  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   5.9  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   5.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.9  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +3

Query: 174 PGGHSALFSKRARRILRQPG*S*IYRFSITSTW*FHIPHFSKLWRCTCLSYPQHSGQTCR 353
           PGG++ L  +R +  L+  G   + RF        HI H   +       + ++    C 
Sbjct: 241 PGGNTQLIPERMKEHLQATGGGVVTRFPPEPNGYLHIGHSKAI--AVNFGFARYHNGVCY 298

Query: 354 RRYPESQPH-QQTVHSEISTGLLQW 425
            R+ ++ P  ++  + E    L+ W
Sbjct: 299 LRFDDTNPEAEEERYFESIKDLVAW 323


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 244 SIGFQSPVPGDFIYRTSLNSGGVPASPILNIADRLVADAIRR 369
           ++  QSP PG FI+R   +     AS +  +  R + D  RR
Sbjct: 578 NLEIQSPPPGVFIFRLQESFTYPNASRVSTMISRRIKDLTRR 619


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 31  ESTGQTTQARSSYTTSEIMWGHRFVPLVTYNRERQ----GYQVDYSKFDETTQVDTPLCS 198
           EST +     S+ +T++ +WG R +  +  + + Q    G++VD+   D+  Q+  P  +
Sbjct: 598 ESTDEVNTDESTLSTAKTVWGTRALANIQNDTDDQDDLDGWKVDW---DKVAQLSAPSKN 654

Query: 199 AK 204
           +K
Sbjct: 655 SK 656


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 407 GYFTVDGLLVRLALRIASATSLSAMLR 327
           G F  D L +RLA RI    +LS MLR
Sbjct: 44  GLFLRDELPIRLARRIQDLQNLSPMLR 70


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 121 NRERQGYQVDYSKFDETTQVDTPLCSAKELDEFYGSQADRRSIGFQSPVPGDFIYRTSLN 300
           N  RQ   V    F  ++++D P  S K  ++ YG          Q P+P + +   +L+
Sbjct: 30  NNVRQSLGVYGRSFMTSSRMDKPSMSNKPREQMYGL---GNMTAVQEPIPENSLKTVTLD 86

Query: 301 SGGVPASPILNI 336
                AS +  +
Sbjct: 87  QAQTAASTVTGL 98


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 19  EGTIESTGQTTQARSSYTTSEIMWGH 96
           EG   +TG T Q+ +++T+S+   GH
Sbjct: 117 EGISSTTGSTFQSMTTFTSSQTNSGH 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,593
Number of Sequences: 5004
Number of extensions: 51145
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)