Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e23f
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1266 - 35865046-35866395                                         31   1.1  
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393           30   1.5  
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278...    30   2.0  
05_05_0126 + 22574191-22575567                                         30   2.0  
02_05_0917 - 32714156-32714319,32714400-32714457,32714548-327146...    29   3.5  
01_01_0685 + 5257336-5257653,5259021-5259073,5259144-5259240,525...    29   3.5  
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    29   4.6  
04_04_0461 + 25390552-25391904                                         29   4.6  
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270...    28   8.1  

>01_06_1266 - 35865046-35866395
          Length = 449

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 179 WTLRSVQQKS*TNFTAARLIVDLSVFNHQYLVI 277
           W++RS+++ S T+  AAR +  L++F   Y+V+
Sbjct: 342 WSMRSLRESSKTDGKAARTLAKLTLFRQFYVVV 374


>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
          Length = 322

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 RFSITSTW*FHIPHFSKLWRCTCLSYPQH 335
           RF++   W  H  +  +LWRC C ++ +H
Sbjct: 256 RFAVRGDWRTHEKNCGRLWRCACGAHFRH 284


>08_01_1011 +
           10226160-10226676,10226794-10226810,10227677-10227886,
           10227921-10228406
          Length = 409

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = +1

Query: 109 LVTYNRERQGYQVDYSKFDETTQVDTPLCSAKELDEFYGSQADRRSIGFQSPVPGDFIYR 288
           L+ YN +    Q+ YS++DE    + PL S  E+DE   +  D   I   S    D IY 
Sbjct: 237 LICYNLKTSLGQIAYSEWDEDEIDEDPLNSEDEIDEDPLNSED--EIDEDSLSSEDEIYE 294

Query: 289 TSLNS 303
             LNS
Sbjct: 295 YFLNS 299


>05_05_0126 + 22574191-22575567
          Length = 458

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 179 WTLRSVQQKS*TNFTAARLIVDLSVFNHQYLVI 277
           W++RS+++ S T+  AAR +  L++F   Y+V+
Sbjct: 351 WSMRSLRETSKTDGKAARTLSKLTLFRQFYIVV 383


>02_05_0917 -
           32714156-32714319,32714400-32714457,32714548-32714618,
           32715280-32715403,32715511-32715582,32715675-32715950
          Length = 254

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = -1

Query: 440 DWSSGPLK*SGGYFTVDG-----LLV--RLALRIASATSLSAMLRIGEAGTP 306
           DWS+ PL   GG   +DG     +LV  R+ +  AS   ++A  R   AGTP
Sbjct: 191 DWSNHPLYTPGGLEVLDGPEPENILVGPRVGIEYASPEHVAAPWRFAVAGTP 242


>01_01_0685 +
           5257336-5257653,5259021-5259073,5259144-5259240,
           5259383-5259481,5259573-5259731
          Length = 241

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 177 LGRLVKFRIIHLISLSFTVVRHKRNEPMPPHNFTGCVTGAR 55
           L R  + RI  +    + +VR KRN+    H F  C+  AR
Sbjct: 78  LCRATRRRITEVYDEMYQIVRAKRNDTGKVHEFINCLVDAR 118


>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 353 ATSLSAMLRIGEAGTPPEFREVRYMKSPGT 264
           +TSL    R    GTPPE R+  +  SPGT
Sbjct: 523 STSLDTPPREKIEGTPPELRQGLFTSSPGT 552


>04_04_0461 + 25390552-25391904
          Length = 450

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 179 WTLRSVQQKS*TNFTAARLIVDLSVFNHQYLVI 277
           W++R++++ S T+  AAR +  L++F   YLV+
Sbjct: 342 WSIRNLREASKTDGKAARNLKKLTLFKQFYLVV 374


>02_03_0179 +
           16025962-16026143,16026570-16026684,16026852-16027065,
           16027346-16027397,16027411-16027696
          Length = 282

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  RRVKPHRRAPVTQPVKLCGGIGSFR 109
           RR +PHR AP+ QP+   G  G  R
Sbjct: 30  RRQQPHRPAPLRQPLAASGHCGGGR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,362
Number of Sequences: 37544
Number of extensions: 349081
Number of successful extensions: 834
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)