Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18e23f
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 91 9e-19
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 87 1e-17
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 5.5
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 5.5
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 5.5
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 5.5
Z48230-1|CAA88262.2| 587|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical ... 27 9.6
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +1
Query: 1 EIVVILEGTIESTGQTTQARSSYTTSEIMWGHRFVPLVTYNRERQGYQVDYSKFDETTQV 180
EI+ ILEG +ES G TTQAR+SY SEI+WGHRF LV Y +E Y +D+ KF V
Sbjct: 331 EIIAILEGVVESVGSTTQARTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSV 390
Query: 181 DTPLCSAKELD 213
+TP CSA E++
Sbjct: 391 NTPTCSAAEIE 401
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 86.6 bits (205), Expect = 1e-17
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = +1
Query: 1 EIVVILEGTIESTGQTTQARSSYTTSEIMWGHRFVPLVTYNRERQGYQVDYSKFDETTQV 180
EI+V+LEG +ESTG T QA++SY SE++WGHRF LVTY R YQ+DY F T V
Sbjct: 325 EIIVLLEGIVESTGMTAQAKTSYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFHSTYPV 384
Query: 181 DTPLCSAKELDEFYGSQ 231
TP S EFY S+
Sbjct: 385 RTPAMSPA---EFYSSK 398
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = +1
Query: 1 EIVVILEGTIESTGQTTQARSSYTTSEIMWGHRFVPLVTYNRERQGYQVDYSKFDETTQV 180
E+++ +EG +E+TG T QAR+S+ EI+WG++F P+V N + Y+V YS FD+T +V
Sbjct: 290 ELIMTVEGIVEATGMTFQARTSFLPDEILWGYKFKPMVLMNEKLSKYEVHYSFFDQTERV 349
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 GTIESTGQTTQARSSYTTSEIMWGHR-FVPLVTYNRERQGYQVDYSKFDETTQ----VDT 186
G++ Q +A S Y R F P T+++ER+ V+ S FD+ Q V T
Sbjct: 193 GSVTVNHQAHRAASPYNVGFARSNSRDFAPQPTHSKERRDSVVEVSSFDQIPQSGLRVST 252
Query: 187 PLCSAKELDEFYG 225
P S + D G
Sbjct: 253 PKPSRQSEDVIDG 265
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 GTIESTGQTTQARSSYTTSEIMWGHR-FVPLVTYNRERQGYQVDYSKFDETTQ----VDT 186
G++ Q +A S Y R F P T+++ER+ V+ S FD+ Q V T
Sbjct: 157 GSVTVNHQAHRAASPYNVGFARSNSRDFAPQPTHSKERRDSVVEVSSFDQIPQSGLRVST 216
Query: 187 PLCSAKELDEFYG 225
P S + D G
Sbjct: 217 PKPSRQSEDVIDG 229
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 GTIESTGQTTQARSSYTTSEIMWGHR-FVPLVTYNRERQGYQVDYSKFDETTQ----VDT 186
G++ Q +A S Y R F P T+++ER+ V+ S FD+ Q V T
Sbjct: 193 GSVTVNHQAHRAASPYNVGFARSNSRDFAPQPTHSKERRDSVVEVSSFDQIPQSGLRVST 252
Query: 187 PLCSAKELDEFYG 225
P S + D G
Sbjct: 253 PKPSRQSEDVIDG 265
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 GTIESTGQTTQARSSYTTSEIMWGHR-FVPLVTYNRERQGYQVDYSKFDETTQ----VDT 186
G++ Q +A S Y R F P T+++ER+ V+ S FD+ Q V T
Sbjct: 193 GSVTVNHQAHRAASPYNVGFARSNSRDFAPQPTHSKERRDSVVEVSSFDQIPQSGLRVST 252
Query: 187 PLCSAKELDEFYG 225
P S + D G
Sbjct: 253 PKPSRQSEDVIDG 265
>Z48230-1|CAA88262.2| 587|Caenorhabditis elegans Hypothetical
protein F42G10.1 protein.
Length = 587
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = +1
Query: 97 RFVPLVTYNRERQGYQVDYSKFDETTQVDTPLCSAKELDEFYGSQADRRSIGFQSPVPGD 276
+F+ ++ + + Y VD FDE T C +D F + R+ +P
Sbjct: 310 QFLYVLCHELQHVHYNVDPPVFDEATWASEKQCVVDRIDHFAAAYKTNRANWTGAP---- 365
Query: 277 FIYRTSLNSGGV 312
F Y S N G+
Sbjct: 366 FSYEDSANVAGL 377
>AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical
protein Y53H1A.5 protein.
Length = 281
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 280 IYRTSLNSGGVPASPILNIADRLVADAIRRASLTNRPSTVKYPPD 414
+Y T+ S P P N IR A T +P+TV+ PPD
Sbjct: 38 MYNTASTSSAPPPPPNQNFGQ------IREAIRTTQPTTVQLPPD 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,565
Number of Sequences: 27780
Number of extensions: 298103
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -