Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18e21r
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 82 3e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 80 1e-15
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 79 2e-15
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 31 0.49
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.0
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.6
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.6
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 28 4.6
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 6.0
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 27 8.0
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 81.8 bits (193), Expect = 3e-16
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Frame = -3
Query: 410 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 240
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65
Query: 239 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHXRTDLCKATLRRASA 66
VV K + KPA + + R+ VK + N+ R DL K L R SA
Sbjct: 66 ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125
Query: 65 ILRSQRPIKAKKAKXSR 15
+ RS + K+ K +R
Sbjct: 126 VYRSLQVAKSGVKKKNR 142
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 79.8 bits (188), Expect = 1e-15
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Frame = -3
Query: 407 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 236 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHXRTDLCKATLRRASAIL 60
V+ K K PAK + + R+ VK + N+ R DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 59 RSQRPIKAKKAKXSR 15
RS + K+ K +R
Sbjct: 128 RSLQVAKSGVKKKNR 142
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Frame = -3
Query: 407 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67
Query: 236 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHXRTDLCKATLRRASAIL 60
V+ K K PAK + + R+ VK + N+ R DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 59 RSQRPIKAKKAKXSR 15
RS + K+ K +R
Sbjct: 128 RSLQVSKSGAKKKNR 142
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 31.1 bits (67), Expect = 0.49
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -2
Query: 480 CLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLL 301
CL + + L+ +N++++ H + Q I CE++ + G L
Sbjct: 675 CLEAISDGISTETRTSLDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYL 733
Query: 300 QVQRLDSQESCWCRGEP*QEGIHS 229
Q L+ + SC GEP + ++S
Sbjct: 734 QDSLLNEKHSCLSCGEPPEAHMYS 757
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 428 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 297
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -2
Query: 423 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 322
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 309 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 419
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 47 ASGSGGWXKHDEG*PCISLCGSG*P 121
A GSGGW + +G + CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 386 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 174 TAD*VFSGLSGSLCFLVHYCESLP-VRVLHDTNSFLVNQAVVPEGVEVSHIVRL---LAE 341
TA+ V G LV C+ P V LHD + F+ +Q ++ V+H++++
Sbjct: 107 TAEVVIRHFDGCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVA 165
Query: 342 RLF---DIALLHKECIV 383
++F D +LL+ +C +
Sbjct: 166 KIFRGKDTSLLYCQCFM 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,851
Number of Sequences: 37544
Number of extensions: 277707
Number of successful extensions: 578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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