Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e19f
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    85   7e-18
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   8.5  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
 Frame = +1

Query: 160 KMNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQX 336
           +M +  A+N+AM+  +K +    L GE+VA + G ++ + GL +K+G  RV +TP+ E  
Sbjct: 37  EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMG 96

Query: 337 XXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSA 516
                            E    ++   A D IVN AA+  Y SGG   +  +  R P   
Sbjct: 97  FTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGG-IQACPIVFRGPNGP 155

Query: 517 VGHGGLYHSQSPEAFFAHXXXXXXXXXXXXIAAKGLLLACIRERDPCVFLEPKILYRSA- 693
                  HSQ    ++                A+GLL A IR+ +P V LE +ILY    
Sbjct: 156 AAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTF 215

Query: 694 --AEEVPVEDYTLP 729
             ++E   ED+ LP
Sbjct: 216 PISKEALSEDFVLP 229


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 326 HSGVLKTRSLPYFSCNPKAHLKTPPNATSSPNNT 225
           +S VL   ++PY SC P     TP +A+S  + T
Sbjct: 147 NSTVLTFTAVPYDSCLPAPDRHTPSSASSRASET 180


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 308 TRSLPYFSCNPKAHLKTPPNATSSPNNTA 222
           T SLP  + N        PN  S+PNNTA
Sbjct: 123 TPSLPQSATNISFDSSAIPNVQSNPNNTA 151


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 661 TRRGPSRGCRPAADPWPLWAREAPPPGDRGHV--QRRPPDSGS 539
           +R  PS   RP + P  L   + PPP  R +V  Q  PP S S
Sbjct: 116 SRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYS 158


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 720 VILDGYFFGCRPVQYLRFQEHAGVP 646
           V+  G  + C   Q L F EH G+P
Sbjct: 208 VVGKGAAYACAEKQLLEFVEHTGIP 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,503
Number of Sequences: 5004
Number of extensions: 63178
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)