Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e04r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.2  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   9.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = -3

Query: 605 PSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN*TQ--RCEKQRNSRTNK 459
           P  P   PG + P +P   PP  PG    R +    Q    EKQ N R  K
Sbjct: 9   PPPPPPPPGFEPPSQP--PPPPPPGYVKKRKNKTPAQSGNLEKQLNERARK 57


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 120 YIHFVHYSDLVFAVSILSKLC 182
           ++ ++HY+  + AV+I+ K+C
Sbjct: 110 WLDYIHYAQKIKAVNIVGKIC 130


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 544  LKSPALLWTEIPTTKRNAVKNNGTL 470
            +K+  LLW   P   R+A+K + T+
Sbjct: 1338 IKNSTLLWERHPIAMRSAIKTHNTI 1362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,557
Number of Sequences: 5004
Number of extensions: 49076
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)