Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18e04r
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0750 - 24140988-24141037,24141108-24141345,24142158-241422... 31 0.77
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 31 1.3
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.3
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 29 3.1
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 29 3.1
12_01_0419 - 3316866-3318172,3318249-3318360 29 4.1
04_03_0368 + 15004949-15005659,15005789-15005848 29 4.1
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 4.1
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 29 4.1
09_04_0313 - 16594171-16594559,16595682-16595751 29 5.4
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 7.2
10_08_0234 - 16067579-16068157 28 7.2
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608 28 7.2
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 28 7.2
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 28 9.5
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 28 9.5
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 28 9.5
>06_03_0750 -
24140988-24141037,24141108-24141345,24142158-24142232,
24142345-24142413,24142550-24142581,24143503-24143583,
24143791-24143851,24144135-24144275,24144372-24144563
Length = 312
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVP 534
PPP FPA P + D + +A +PS P SP P P S + P
Sbjct: 15 PPPAFPADP-HLVDRAARFSAFASPSPP--SPPPPPPPPPSSSSKRKP 59
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFS-SLAAIWAP---SAPLWSPGTDAPQRPERSPPKVPGAPLDR 516
PPP PA A + P AA W +A W P P P PP P A L R
Sbjct: 389 PPPPLPAAWAHGHQPAPVDPAAYWQQQYNAARKWGPQAVTPGTPCMPPPLPPAAMLQR 446
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSLAAIWA-----PSAPLWSPGTDAPQRPERSPPKVPGA 528
PPP PA PA P S +A A P P +P P P PP PGA
Sbjct: 323 PPPAHPAAPAPP-PPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGA 376
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 662 PAQP--ARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVPGAPL 522
PA P A +D S+ A W PS + P P + + P V APL
Sbjct: 246 PAAPIAASDHDAHSAPAQSWIPSTTVLFPQASVPPQAAQMDPSVHAAPL 294
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 511 EFRSRGAPGTLGGDRSGRWGASVPGDHRGADGAQMAA 621
E + +PG GG R GRW S G G D ++ A
Sbjct: 25 ELARQESPGVAGGRRQGRWCRSWHGRRIGRDDQEVRA 61
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVPGAPLD 519
PP P P+ V DP L + P P + P+ P P V P +
Sbjct: 278 PPHAEPEPPSDVPDPIDILCVVEEPKPPATVDEPEQPKPPAAVEPPVQEPPAE 330
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVPGAP 525
PP GF Q R ++ IW P + +W P RP P G P
Sbjct: 137 PPTGF--QHPRRRRLLTAGRQIWPPGSRIWPPAPFLASRPPMPPSLASGKP 185
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 680 RPPPGFPAQPARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVPGAP 525
RPP G P +P + P ++ AA P AP+ P PP+ +P
Sbjct: 9 RPPQGVPGRPVSAFVPGAATAA----PPPSSFGAASAPRAPFVPPPQAAASP 56
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 677 PPPGFPA-QPARVYDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSD 507
PPP FP+ + +R D + L P AP S P+ PPK P + RN D
Sbjct: 562 PPPKFPSNEMSRNEDRCADLNK---PMAPPKSMPPPPPKSMPPPPPKFPSNEMSRNED 616
>09_04_0313 - 16594171-16594559,16595682-16595751
Length = 152
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 544 GGDRSGRWGASVPGDHRGA 600
GGD + W SV GDH GA
Sbjct: 29 GGDGTASWSVSVGGDHGGA 47
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = +1
Query: 532 PGTLGGDRSGRW----GASVPGDHRGADGAQMAASELKGS 639
PG GG GRW G + G G DG + A + GS
Sbjct: 51 PGRDGGGLRGRWPGRDGGGLRGRRPGRDGGNLGADSVGGS 90
>10_08_0234 - 16067579-16068157
Length = 192
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 544 GGDRSGRWGASVPGDHRGADGAQMAASELKG 636
GG G WG+S GD GA +A+ G
Sbjct: 123 GGQAGGNWGSSGSGDGSGAGSGSSSANTYYG 153
>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
Length = 325
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 608 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNS 510
AP AP +P PQ +++PPK A DR++
Sbjct: 198 APVAPAAAPPPPPPQPKKKAPPKSSEASRDRDN 230
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -3
Query: 641 YDPFSSLAAIWAPSAPLWSPGTDAPQRPERSPPKVP-GAPL 522
Y P S +W P PG PQ P PP V GAP+
Sbjct: 40 YRPASGF--VWPPPGMTPRPGPPQPQYPRPGPPAVVYGAPM 78
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSL------AAIWAPSAPLWSPGTDAPQRPERSPPKVPGA 528
PPP AR+ P +S A+ WA S P + P R + SP PGA
Sbjct: 68 PPPKASPSAARLQKPAASCHGGQPKASPWAGSPPGAATHLQQPSRMKLSPSPAPGA 123
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = -3
Query: 677 PPPGFPAQPARVYDPFSSL------AAIWAPSAPLWSPGTDAPQRPERSPPKVPGA 528
PPP AR+ P +S A+ WA S P + P R + SP PGA
Sbjct: 68 PPPKASPSAARLQKPAASCHGGQPKASPWAGSPPGAATHLQQPSRMKLSPSPAPGA 123
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 505 LSEFRSRGAPGTLGGDRSGRWGASVPGDHRG 597
+S RS GAPG R G W ASVP D G
Sbjct: 215 ISVLRSNGAPGLEISLRDGAW-ASVPHDGDG 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,536
Number of Sequences: 37544
Number of extensions: 343577
Number of successful extensions: 1264
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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