Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e04f
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.5  
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   6.0  

>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 322 LEFGRAALAEPHARRVT-LTN-LANTTIHLASVAGTTPDFHASFFESKTL 465
           + F   A    ++ R+T L+N L N+T++   VA  TP F A   +S T+
Sbjct: 125 ISFDAWAYTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLDSPTI 174


>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 322 LEFGRAALAEPHARRVT-LTN-LANTTIHLASVAGTTPDFHASFFESKTL 465
           + F   A    ++ R+T L+N L N+T++   VA  TP F A   +S T+
Sbjct: 125 ISFDAWAYTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLDSPTI 174


>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 322 LEFGRAALAEPHARRVT-LTN-LANTTIHLASVAGTTPDFHASFFESKTL 465
           + F   A    ++ R+T L+N L N+T++   VA  TP F A   +S T+
Sbjct: 126 ISFDAWAYTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLDSPTI 175


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 244 SLLSENHVV*HHDSFLGPTVWSLTKYP 164
           SL  + HVV   D ++ P++  L+KYP
Sbjct: 783 SLKKDEHVVLSDDYWMKPSIEELSKYP 809


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 163 LDISLKTRLSAQGKSHGVTLHDSLIEGISFQEWGS 267
           LD+            +G T  + LIEGI+  EW S
Sbjct: 581 LDLKFDVNGEVIRNRYGTTPDEELIEGIATYEWSS 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,816
Number of Sequences: 5004
Number of extensions: 41856
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)