Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e04f
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    50   2e-06
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    29   2.7  
11_02_0026 - 7495102-7495656                                           27   8.1  
02_04_0192 + 20795659-20796309                                         27   8.1  

>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +1

Query: 307 LQPPSLEFGRAALAEPHARRVTLTNLAN-TTIHLASVAGTTPDFHASFFESKTLAPQANT 483
           + PP L++G+++L       +T+ NL N + + +     T P F+   ++   L P+ N 
Sbjct: 188 ISPPVLDWGKSSLYVASMATLTVVNLNNDSALRVYEPFSTDPQFYVYGYDDLVLQPRENA 247

Query: 484 TFSVVYLGRHEGPASAHLYIHTSLGVF 564
           + + ++L +  G +SAHL + T+ G F
Sbjct: 248 SVTFIFLPKLLGSSSAHLVLQTNFGGF 274


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = +1

Query: 148 FVLTLLDISLKTRLSAQGKSHGVTLHDSLIEGISFQEWGSEAGDSKRGAEGIWLQPPSLE 327
           F +TL   ++K           +     ++ G+S  +W +EAG++   ++ I   P S  
Sbjct: 636 FPITLRTEAIKDDRPEYASLQAILFGPFVLAGLSTGDWNAEAGNTSAISDWISPVPSSYN 695

Query: 328 FGRAALAEPHARRVTLTNLANTTIHL---ASVAGTTPDFHASF 447
                  +  + +  + + AN ++ +    +V GT    HA+F
Sbjct: 696 SQLVTFTQESSGKTFVLSSANGSLTMQERPTVDGTDTAIHATF 738


>11_02_0026 - 7495102-7495656
          Length = 184

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 337 AALAEPHARRVTLTNLANTTIHLASVAGTT 426
           AA A   A RVT+T+LANTT    +  G++
Sbjct: 20  AAAATATASRVTVTSLANTTSSSVAALGSS 49


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 350 SASAARPNSKLGGCSHIPSAPRLLSPASL 264
           S+S   P   +GG  H PSAP L  P SL
Sbjct: 98  SSSKQPPPGVVGGGKHYPSAPPLPLPPSL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,295
Number of Sequences: 37544
Number of extensions: 291664
Number of successful extensions: 934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)