Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e04f
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    65   4e-11
U64855-4|AAB04983.1|  445|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        30   1.0  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    30   1.0  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    30   1.0  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    30   1.0  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/88 (34%), Positives = 50/88 (56%)
 Frame = +1

Query: 307 LQPPSLEFGRAALAEPHARRVTLTNLANTTIHLASVAGTTPDFHASFFESKTLAPQANTT 486
           + PP ++FG+ ++     R++ + N+ N  I L +V   + +F AS+FE   L P   T+
Sbjct: 3   MDPPMMDFGQNSVGTAQKRKIYIRNMRNEQIFLDAVVVNSIEFQASYFEQYKLEPHGVTS 62

Query: 487 FSVVYLGRHEGPASAHLYIHTSLGVFKY 570
             VV+L R  G  S  ++ +TS+GVF Y
Sbjct: 63  LEVVFLPREIGKRSTIVHFYTSVGVFTY 90


>U64855-4|AAB04983.1|  445|Caenorhabditis elegans Hypothetical
           protein ZK742.4 protein.
          Length = 445

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 328 FGRAALAEPHARRVTLTNLANTTI-HLASVAGTTPDFHASFFESKTLAPQA 477
           F RAA  EP   R  L+ +A++T+ +  S A      HA+ F+ KT+A ++
Sbjct: 341 FARAAAGEPDLPRKLLSGVAHSTLDNKFSPADYFTSKHAAHFQMKTMAARS 391


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 163 LDISLKTRLSAQGKSH----GVTLHDSLIEGISFQEWGSEAGDSKRGAEGIWLQPPSLEF 330
           L +SLK R+S +        G+ + + +  G +F+E G    D   G E I L+P     
Sbjct: 671 LGVSLKARVSKKSNGSKVDCGIFIKNVMHGGAAFKEGGLRVDDRIVGVEDIDLEPLDNRE 730

Query: 331 GRAALAE 351
            +AALA+
Sbjct: 731 AQAALAK 737


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 163 LDISLKTRLSAQGKSH----GVTLHDSLIEGISFQEWGSEAGDSKRGAEGIWLQPPSLEF 330
           L +SLK R+S +        G+ + + +  G +F+E G    D   G E I L+P     
Sbjct: 635 LGVSLKARVSKKSNGSKVDCGIFIKNVMHGGAAFKEGGLRVDDRIVGVEDIDLEPLDNRE 694

Query: 331 GRAALAE 351
            +AALA+
Sbjct: 695 AQAALAK 701


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 163 LDISLKTRLSAQGKSH----GVTLHDSLIEGISFQEWGSEAGDSKRGAEGIWLQPPSLEF 330
           L +SLK R+S +        G+ + + +  G +F+E G    D   G E I L+P     
Sbjct: 671 LGVSLKARVSKKSNGSKVDCGIFIKNVMHGGAAFKEGGLRVDDRIVGVEDIDLEPLDNRE 730

Query: 331 GRAALAE 351
            +AALA+
Sbjct: 731 AQAALAK 737


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 163 LDISLKTRLSAQGKSH----GVTLHDSLIEGISFQEWGSEAGDSKRGAEGIWLQPPSLEF 330
           L +SLK R+S +        G+ + + +  G +F+E G    D   G E I L+P     
Sbjct: 671 LGVSLKARVSKKSNGSKVDCGIFIKNVMHGGAAFKEGGLRVDDRIVGVEDIDLEPLDNRE 730

Query: 331 GRAALAE 351
            +AALA+
Sbjct: 731 AQAALAK 737


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 460 TLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFKY 570
           TL+P A+TT + +Y+G + GP+ A       L  F Y
Sbjct: 225 TLSPPADTTITTLYIG-NLGPSGAQQVTEKDLNDFFY 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,162
Number of Sequences: 27780
Number of extensions: 244252
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)