Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18e04f
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 313 PPSLEFGRAALAEPHARRVTLTNLA 387
           PP+L     +  +P++  +++TNLA
Sbjct: 656 PPNLASANISQLDPYSSLLSITNLA 680


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 436 HASFFESKTLAPQANTTFSVVYLGRHE 516
           H +    + L    +T F  +Y+ RHE
Sbjct: 244 HVAVKMRQDLGASLDTQFKKIYMSRHE 270



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  VVVEKTTRSAGRNVNKQCHVTNISFKMYRKIVWCYVFVLTLLDISLKTRLSAQGKSH 210
           VVVE+T  S         +VT +S K      + Y+ VLTL+  S+ T +   GK++
Sbjct: 615 VVVEETIPSLNST-----NVT-LSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAY 665


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 156 DLIGYFVKDQTVGP 197
           DL+GY + D+T  P
Sbjct: 234 DLLGYVMPDRTFAP 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,771
Number of Sequences: 438
Number of extensions: 2945
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)