Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d22r
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    28   1.4  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          27   2.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.6  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 473 LTYIFQNEISQSSKLSEELKWQ 408
           L+Y++Q + S+ SK++E+L W+
Sbjct: 295 LSYLYQMDFSEPSKVNEQLDWR 316


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 732 ACEDSSFRVDVNNIKEM*RMTLITGTVCKIYCTIG 628
           +C+DSSFR+ +N I  +  +  +TG + +   T G
Sbjct: 112 SCKDSSFRISINFIDYVLGVCDMTGEIMRFLVTNG 146


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 647  LQTVPVINVIRYISFILLTSTLKEESSHAPSHALSVVEHVESIHKLI 787
            LQ++ ++++   I+ I    +L  E+ +  S+ALS ++H  + HK++
Sbjct: 1093 LQSIKMLDLTTCINGIF--ESLCSENENTRSNALSCIDHYLNAHKML 1137


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 245 VLLNQKKNKLFITWYRISGKKYFKLEL*FYNKHISFIQVNLETKLKKSIL 394
           VLL    + LFIT  +   KK+  L L  + KH      N  T L+K+++
Sbjct: 736 VLLRVVDDFLFITVNKKDAKKFLNLSLRGFEKH------NFSTSLEKTVI 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,420
Number of Sequences: 5004
Number of extensions: 67925
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)