Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d22r
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    30   1.8  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    29   4.1  
AF098993-2|AAC67466.1|  549|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = -1

Query: 213 KESICMLFFFLIVPYSP*TSLSEIPFTSRAI*VLKLYTLKFNSKNMKNNIQCMLVSLDL 37
           ++S C+ F      Y      S++ F+S  + VL +Y LK++SK+M  +   +LV++ L
Sbjct: 69  EDSCCVSFETATSWYYRTAQASQVVFSSMGLVVLTVYALKYSSKHMLPSNVRVLVNIIL 127


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 595 KQNIHNICSYKTNCTIYFADGTRY*RHSLHFFYIINVHPKRRVL--ACAFPCPVC 753
           KQ +  IC    +  IYF    +  + S H  +++ +HP  +     C F CP C
Sbjct: 355 KQIVCRICGMSFSKRIYFFSELKNFQRSNHDRHMLKIHPIEQDSRDQCQFQCPDC 409


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 605 FTIFAVTKPIVQYILQTVPV---INVIRYISFILLTSTLKEESSHAPSHALSVVEHVESI 775
           FT + +  PI  ++   + +   + V+R I F+L+ +T           ALS +E V+ +
Sbjct: 281 FTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVLMEATPSHYDLSDVKKALSALEGVKGV 340

Query: 776 HKL 784
           H L
Sbjct: 341 HDL 343


>AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2a protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 605 FTIFAVTKPIVQYILQTVPV---INVIRYISFILLTSTLKEESSHAPSHALSVVEHVESI 775
           FT + +  PI  ++   + +   + V+R I F+L+ +T           ALS +E V+ +
Sbjct: 262 FTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVLMEATPSHYDLSDVKKALSALEGVKGV 321

Query: 776 HKL 784
           H L
Sbjct: 322 HDL 324


>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 599 KIFTIFAVTKPIVQYILQTVPVINVIRYISFILLTSTLKEESSH 730
           KIF I+A+T   + +I+ ++ ++N+IR +S + L  +      H
Sbjct: 209 KIFIIYAITGGSIGFIVFSLVLLNIIRMLSQLRLKISKSNYQKH 252


>AF098993-2|AAC67466.1|  549|Caenorhabditis elegans Hypothetical
           protein T10B11.2 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 700 NVHPKRRVLACAFPCPVCRR 759
           NV+PK ++  C  PCPVC +
Sbjct: 376 NVNPKDQLPPCLEPCPVCMK 395


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 284  WYRISGKKYFKLEL*FYNKHISFIQVNLETKLKKS 388
            W RI+GKK   ++L   ++H       +E KLK++
Sbjct: 3021 WARIAGKKPLAIQLEAASRHFGIFAERVEQKLKEA 3055


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,383
Number of Sequences: 27780
Number of extensions: 364431
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)