Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d22f
         (744 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   0.46 
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   4.3  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   10.0 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   10.0 

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 28  IETIQIFISHYIVL*FQFIEFSYPRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPA 207
           I  I +F+ H+++  F F  FS+    ++SA  I    E+   S S+   +E+P+   P 
Sbjct: 53  INFIFMFLLHFVLFSFSFPFFSFAPCTLASATEISLP-ELVTRSLSN---LELPSCRLPC 108

Query: 208 P 210
           P
Sbjct: 109 P 109


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +1

Query: 607 MLNPAGRNGDQLPVVLYESVIDVVNGRATNATSTFNIYISR 729
           ++ P G N D+L V +   +  +++    N   T N+++ +
Sbjct: 38  LIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQ 78


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 285 RMERDGHRTGCSSRN 241
           R +RD H TGCS  N
Sbjct: 294 RTKRDFHPTGCSLNN 308


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 285 RMERDGHRTGCSSRN 241
           R +RD H TGCS  N
Sbjct: 294 RTKRDFHPTGCSLNN 308


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,424
Number of Sequences: 2352
Number of extensions: 13518
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)