Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d21r
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    29   1.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    27   3.3  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   3.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.8  

>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 575 YNVSIFISFKRLSVFFQSCRLNM*YDSKGSAL 670
           YN+S FISF   S+FF S  L + Y S  S L
Sbjct: 9   YNLSFFISFTFSSIFFSSLILFLVYKSVLSKL 40


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 371 YFVNPQCNVSALIIQ--TGILTPSTCTRQLISKCDTLHVM 258
           +F NP+    +L I   +  L P   ++QL+ +C+  HV+
Sbjct: 158 HFYNPKLTTPSLHIAGTSDTLVPLARSKQLVERCENAHVL 197


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 663 EPFESYHILRRQL*KKTDNRLKEINIETL 577
           E FE YHIL + +   + N L+++ IE++
Sbjct: 29  EAFEDYHILGKDIDLLSSNDLRDMGIESV 57


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 496 KNSENREFSLCFL*AILQFGFSDILRLQ 579
           KNS+N +FS   L AIL+FG S++ + +
Sbjct: 848 KNSKNDKFSAEELSAILKFGASNMFKAE 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,353
Number of Sequences: 5004
Number of extensions: 67185
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)