Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d21f
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.027
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.061
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.19
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.33
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 29 0.57
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.57
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.3
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 4.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 7.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 7.0
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 9.3
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.027
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 423 PTDTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAIS---QTTTNSASEITAVTTA 593
P+ LST + TIT + NTI + S P +TT++IS T N++++IT+ T
Sbjct: 321 PSVALSTSSTTTITNASTPAANTII--SRSSKPTDTTNSISFANTTPENTSTQITSPTAV 378
Query: 594 MPSEATTSA 620
S TS+
Sbjct: 379 NSSTPITSS 387
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.061
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 450 SQTITESLPVITNTISFQTTSQLPIETTSAISQTTTN---SASEITAVTTAMP--SEATT 614
+ T + S+P+ + S T+ P+ TTS T+T+ + + T VT +P S ++T
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Query: 615 SAPP 626
S PP
Sbjct: 314 STPP 317
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +3
Query: 423 PTDTLSTDV-------SQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITA 581
PT T ST + S T T S P+ T + S T++ +P +S++S T + +
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
Query: 582 VTTAMPSEATTSA 620
+T++P T+++
Sbjct: 257 SSTSIPIPPTSTS 269
Score = 29.9 bits (64), Expect = 0.43
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 423 PTDTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPS 602
PT T ST + T + TN+ TTS TTS T S+S T +T +P
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSC--TTSTSIPPTGGSSSLSTPITPTVPP 197
Query: 603 EATTS 617
+T+S
Sbjct: 198 TSTSS 202
Score = 28.7 bits (61), Expect = 1.00
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 435 LSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPSEATT 614
LST S T + S+P N+ + T + P T+S+ TTTN + + T+ P +T
Sbjct: 387 LSTSTSCTTSTSIPPTGNSTTPVTPTVPP--TSSSTPLTTTNCTTSTSVPYTSTPVTSTP 444
Query: 615 SA 620
A
Sbjct: 445 LA 446
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 441 TDVSQTITESLPVITNTISFQTTSQLPIETTSAISQT----TTNSASEITAVTTAMPSEA 608
T S T T P T++ ++S LP +TS + T T NS + +T T S +
Sbjct: 308 TSTSSTSTPPPPASTSSTG-TSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP-TVPPTSTS 365
Query: 609 TTSAPP 626
+TS PP
Sbjct: 366 STSTPP 371
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +3
Query: 432 TLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPSEAT 611
T+ST S IT S+P ++ +S T I TTS + T++ S + +PS ++
Sbjct: 90 TISTSSSTPITASVPTSSSILSNST-----IPTTSPVPTTSSTPTSSSILSNSTIPSSSS 144
Query: 612 TSA 620
SA
Sbjct: 145 ISA 147
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.33
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 432 TLSTDVSQTITESLPVITNTISFQTTSQLPIE--TTSAISQ----TTTNSASEITAVTTA 593
T++T V T E + +T + TT +P+E TT I T T EIT +TT
Sbjct: 10 TITTIVIITPMEEITTMTIPMEEITTMTIPMEEITTMTIPMEEITTMTTPMEEITTITTP 69
Query: 594 MPSEATTSAP 623
M E TT P
Sbjct: 70 M-EETTTITP 78
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 432 TLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAIS--QTTTNSASEITAVTTAMPSE 605
T++T + +T T + V T TI P+ T+ I +TTT E T +T + E
Sbjct: 65 TITTPMEETTTITPMVETTTILPMAAMTTPMVETTTIPTVETTTTPMVETTTITPMV--E 122
Query: 606 ATTSAP 623
TT P
Sbjct: 123 TTTITP 128
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 423 PT-DTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTT 590
PT +T++T + + +T LP+ T + T+ P+E T+ T + A+TT
Sbjct: 177 PTVETMTTPMVEAMT-ILPMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTT 232
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 426 TDTLST--DVSQTITESLP--VITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTA 593
+D LS+ +S T++L V T++ S + ++ SA + +SA+ ++V+T
Sbjct: 163 SDILSSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSAT--SSVSTV 220
Query: 594 MPSEATTSAPP 626
+PS ++APP
Sbjct: 221 IPSSIISAAPP 231
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.5 bits (63), Expect = 0.57
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +3
Query: 426 TDTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPSE 605
T +TDV+ T+T + P+ + ++ + S ET S S T+TN S + +T+ S
Sbjct: 23 TPGFTTDVATTVTPT-PLPSANVTTTSFSSASTET-STHSVTSTNITSIVPPPSTSHNS- 79
Query: 606 ATTSAPP 626
TT+ PP
Sbjct: 80 TTTTVPP 86
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 423 PTDTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPS 602
P ST TIT + +I ++ SF TT+ P TS+ ++ S++ +++ + S
Sbjct: 190 PPPASSTSSFSTITNT-SMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTS 248
Query: 603 EATTSAPP 626
T+++ P
Sbjct: 249 IITSTSTP 256
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 426 TDTLSTDV-SQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPS 602
T T T+ + T TE P T + T +Q+ T + T +A T VTT +
Sbjct: 1213 TGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTET 1272
Query: 603 EATTS 617
+ATT+
Sbjct: 1273 QATTA 1277
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 426 TDTLSTDV-SQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPS 602
T T T+ + T TE P T + T +Q+ T + T +A T VTT +
Sbjct: 1295 TGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTET 1354
Query: 603 EATTS 617
+ATT+
Sbjct: 1355 QATTA 1359
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 456 TITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPSEATTS 617
T +E LP T + T +QL T + T +A T VTT ++ATT+
Sbjct: 1142 TGSEVLPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQATTA 1195
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 513 QLPIETTSAISQTTTNSASEITAVT-TAMPSEATTSAPP 626
Q + + + S +TT +A+ T VT T +P +T PP
Sbjct: 330 QSNVSSITGTSTSTTTAATSSTTVTGTVIPKSSTVHEPP 368
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 447 VSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNS 563
+SQTITES T + + ++T TTS + +T NS
Sbjct: 490 LSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNS 528
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 447 VSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITA-VTTAMPSEATTS 617
V++TI T+TI Q T+ +E + T T++ T+ TT +P+ T S
Sbjct: 1053 VTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTSTTGSGTSWFTTTVPATGTRS 1110
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 423 PTDTLSTDVSQTITESLPVITNTISFQTTSQLP-IETTSAISQTTTNSASEITAVTTAMP 599
PT + + T S+P + +S T QLP + + T + V+TA+P
Sbjct: 1024 PTASQRASAYEPPTVSVPS-PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALP 1082
Query: 600 SEATTSAPP 626
S + S PP
Sbjct: 1083 SSSAVSRPP 1091
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 429 DTLSTDVSQTITESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMP 599
D ++ +T S+P + T+S T+ ++ + TTT S +T + A+P
Sbjct: 623 DAIAFHQGALVTPSVPPVIATVSKTNTTNTGVQQRGNVGVTTTGSI--LTQSSPALP 677
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 171 SSEHIQTCSPRTTNSPQETDATSTLKAETTTNSYNTAD 284
+ H T + RTT++P T A +T T + NT++
Sbjct: 138 AGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSN 175
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 162 CSPDTRSTVVHRISRLGKSLQITLTQNC 79
C P R+ V +R S+L + L+ +L NC
Sbjct: 332 CDPHRRAHVPYRDSKLTRLLKFSLGGNC 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,693
Number of Sequences: 5004
Number of extensions: 45152
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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