Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d21f
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0202 - 1513835-1514282,1514506-1514571,1515420-1515508,151...    29   4.2  
07_03_1232 + 25052415-25052918                                         29   4.2  
12_01_0373 + 2897874-2898911                                           29   5.5  
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    29   5.5  
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    29   5.5  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    28   9.7  

>12_01_0202 -
           1513835-1514282,1514506-1514571,1515420-1515508,
           1518011-1518352
          Length = 314

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 135 QQCYVCRDCNVVSSEHIQTCSPRTTNSPQETDATSTLKAETTTN 266
           Q+ Y+  D  VVS++   +  PRT  +P +   +   +AE T +
Sbjct: 216 QEAYITMDDQVVSAKRTVSLHPRTQETPLDMGRSEVGRAEETVS 259


>07_03_1232 + 25052415-25052918
          Length = 167

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 668 HSCCSFSLDIISCLRWC*CCRFGRHSS-CNSRYFAC 564
           H     +L +++  RWC  CR   H+  C  R  AC
Sbjct: 68  HPAHELTLSLLTASRWCDACRVASHAGRCVYRCVAC 103


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 462 TESLPVITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTA 593
           + S    T T +  TT+      ++A + TT+N A+ +TA  TA
Sbjct: 264 SSSSDTTTTTTAAATTTTSDTSCSTASTSTTSNGATSVTAAATA 307


>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 423 PTDTLSTDVSQTITESLPVITNTISFQTTSQLPIETT-SAISQTTTNSASE 572
           PT   S D S   +  +P+ T  I+ Q   + P+ET+  A    T+NS+ E
Sbjct: 526 PTIPSSKDSSSAPSYPMPIETEEIANQIQEKRPVETSRKAAENFTSNSSME 576


>01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,
            5891941-5892073,5892629-5892732,5892867-5895780,
            5895876-5895965,5896251-5896355,5896633-5896740,
            5896826-5896876
          Length = 1334

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 480  ITNTISFQTTSQLPIETTSAISQTTTNSASEITAVTTAMPSEATTSA 620
            + NT+  +T     +  +S I  T  N   E T +++  P+E T  A
Sbjct: 882  LANTLQRRTPKYTDLPMSSVIVNTDANGTDESTQISSLAPNETTFEA 928


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 740 WCISSCLRCYSSCYIDWYIRSCLRHSCCSFS-LDIISCLRWC*CCRFGRHSS 588
           +C+ +C+R   SC   W  R+     CC F+ +  +  +  C   R GR  S
Sbjct: 12  FCVRACVRAGGSCRRQW--RADSSSCCCCFAYMRFLMAIVACALLRVGRGES 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,674
Number of Sequences: 37544
Number of extensions: 270859
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)