Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d19r
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p...    30   1.8  
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.4  

>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
           protein F46F11.1b protein.
          Length = 1225

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 557 VIYESSETRPIGDRDLM--SLGASLKRGNKGIKRFKRINKY 673
           VI E S+TRP G    +  S+  + +R NK ++ F+R NK+
Sbjct: 684 VIVEYSQTRPTGSTLYLQESMDLAQRRWNKELREFRRKNKH 724


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
           protein F46F11.1a protein.
          Length = 1339

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 557 VIYESSETRPIGDRDLM--SLGASLKRGNKGIKRFKRINKY 673
           VI E S+TRP G    +  S+  + +R NK ++ F+R NK+
Sbjct: 684 VIVEYSQTRPTGSTLYLQESMDLAQRRWNKELREFRRKNKH 724


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/90 (24%), Positives = 41/90 (45%)
 Frame = +2

Query: 551 YIVIYESSETRPIGDRDLMSLGASLKRGNKGIKRFKRINKYKIGAIFERPGLANSALYNT 730
           Y+V Y+      IG R ++SLG     G      F  ++ Y I    +   ++ +     
Sbjct: 181 YVVAYDMGIREYIGYRQVISLGTVTVEG----LVFLILSHYHIYVSTKNMKVSTTMKMQK 236

Query: 731 KTLKDLHLKASIPALLTETTGVIRNVPTYM 820
             LK L+++ +IPA++     ++ NV  Y+
Sbjct: 237 IFLKALYMQIAIPAIIMVVPQIVLNVLGYL 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,211,629
Number of Sequences: 27780
Number of extensions: 319848
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)