Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d19f
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 31 0.23
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.53
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 29 0.70
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 28 1.2
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 2.1
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 27 2.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 3.8
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 26 5.0
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 6.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 8.7
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 8.7
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 30.7 bits (66), Expect = 0.23
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -1
Query: 729 FNKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNTHTHNE-FLTKSFTLPEL 553
F + +++ + N S Q LNK + +NFN S+T+ + F ++S LP
Sbjct: 22 FQRAQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSS 81
Query: 552 HSALNSRRDTAFGLDNISYKMLKN-LSVDVKK 460
L ++R G S K L N + DV K
Sbjct: 82 PITLPAKR----GRSAASLKQLDNTVGFDVSK 109
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 29.5 bits (63), Expect = 0.53
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 711 NNNIKSSTNSSWIQDFLNK-FSSNPQSQVNFNIHVSNTHTHNEFLTKSFTLPELHSALNS 535
N + S NSS D L + S N V N+++S+ H F +K F L LH L
Sbjct: 432 NAILHCSNNSS---DLLERNMSYNAHPYVADNLNISSDHI--SFPSKPFALGLLHDTLLE 486
Query: 534 RRDTAFGLD 508
R+ GL+
Sbjct: 487 RKSPTLGLE 495
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 117 LQQYQEKHRQGICYMQMHYEYLSKDYSYFQQQKNLYGNQIDLKVIIYLILYRTLIFVLTF 296
L Q +KH + Y Q H + K+Y ++N + N+ K ++ F+L F
Sbjct: 66 LMQCNKKHLEASRYFQTHVKEFMKEY---VDRENKFSNETISKSSAAALMTSMENFIL-F 121
Query: 297 AQKVYQNKM 323
VY NK+
Sbjct: 122 TNPVYHNKL 130
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 570 FTLPELHSALNSRRDTAFGLDNISYKMLKNLSVDVK-KMLILILNLLWN 427
F P+L++ L S R+T F D+ +L LS+ V+ + L+ I L WN
Sbjct: 249 FNSPKLYAYLKSLRETWFSDDS---NILSPLSIKVQPENLLTIARLAWN 294
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 612 VSNTHTHNEFLTKSFTLPELHSALNSRRDTAFGLDNISYKMLK-NLSVDVKKML 454
V + HN LT F +++A + + AFG + ++ + NL +D++ ML
Sbjct: 797 VDDCRKHNVILTSPFIASGVYTAFCVQAEAAFGSNVLAASTARHNLEIDLRLML 850
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 2.1
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = -1
Query: 744 KTIRKFNKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIH--VSNT---HTHNEFL 580
K RK + + + N I+DF++K S + NIH ++ T HT N +
Sbjct: 296 KIARKLSSDFEGRRQAKTVNQ--IRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYF 353
Query: 579 TKSFTLPELHSALNSRRD--TAFG-LDNISY 496
K L +L L S D T F LD I Y
Sbjct: 354 QK---LLQLQHLLVSHADSFTQFNLLDEIIY 381
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 17 CNIASASAVKMLDEGMPRVNSSLVRTLWSTLLNAPTISRKTQTRNLLY 160
CN + + + ++ SSL+ L S +++ + R+ QT+N LY
Sbjct: 382 CNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLY 429
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 717 YHNNNIKSSTNSSWIQDFLNKFSSNPQ 637
++NN++ N + +D + K+S NPQ
Sbjct: 277 FYNNSVLEEQNLLFYRDLVKKYSVNPQ 303
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 135 KHRQGICYMQMHYEYLSKDYSYFQQQKN-LYGNQID 239
KH Q + Q Y YL K +Y+ Q+N L+G +++
Sbjct: 142 KH-QALVKAQDKYHYLCKKVNYYVSQQNMLFGKELE 176
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -1
Query: 735 RKFNKTYHNNNIKSSTNSSWIQDFLNK-FSSNPQSQVNFNIHVSNTHTHNEFLTKSFTLP 559
R+ +TY+ + I S I++ +S + + + + HT F
Sbjct: 83 RELAQTYNIHEINLEEYVSQIKEVKQSLYSDDSVFNESKSSSPPDAHTDKYFTPCGSPTK 142
Query: 558 ELHSALNSRRDTAFGLDNISYKMLKNLSVDVK 463
+HS L RDT L+++S+ + ++ +V+
Sbjct: 143 LIHSTLLEERDTPSSLEHVSFYLQESAVSEVR 174
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 684 SSWIQDFLNKFSSNPQSQVNFNIHVSNTHTHNEFLTKSFTLPE 556
SSW + +NK S+ N+ SN+ + + + TLP+
Sbjct: 505 SSWRESMVNKLRSSVSDSPTMNLANSNSKSSPVAVQRVSTLPQ 547
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.7
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Frame = -1
Query: 675 IQDFLNKFSSNPQSQ--VNF---NIHVSNT---HTHNEFLTKSFTLPELHSALNSRRDTA 520
I ++LN++ +P+ + +N+ N H+ T H E + F P LHS ++ T
Sbjct: 375 ISEYLNEYKPSPKMRELINWLYSNFHLPKTVSLHFLREVQSLVFRYPLLHSKIHLAISTL 434
Query: 519 --FGLD-NISYKMLKNLSVD--VKKMLILILNLLWNASLIPPEWKIDCLVP-ILKPGKDN 358
G D N+ L L V+ + + + + NA PP D + +LK
Sbjct: 435 KDSGCDWNVGLSYLNWLFVNKRITEAINFFYTITINAGTRPPNELFDVFISNLLKFTSAE 494
Query: 357 TNHNSYRPI 331
T ++ R +
Sbjct: 495 TTSSAIRKV 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,460
Number of Sequences: 5004
Number of extensions: 60349
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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