Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d19f
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 48 6e-06
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 43 3e-04
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 33 0.24
03_03_0228 + 15606909-15607166,15608712-15608822 32 0.42
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981... 30 2.2
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 29 3.9
08_02_0854 - 21905054-21906308,21906396-21907300 28 9.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 9.1
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 48.4 bits (110), Expect = 6e-06
Identities = 35/115 (30%), Positives = 59/115 (51%)
Frame = -1
Query: 390 LVPILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRLEFYIESNKLLPSNQFGFRRGFS 211
+V I KPGK+NT + YRPI+L +C K+ ++L RL+ +++ +Q GF +G
Sbjct: 973 IVLIQKPGKENTV-DGYRPISLQNCSVKILSKVLATRLQRVF--LRMIHLDQTGFLKGRC 1029
Query: 210 AAESMNNLYLDIHSAFAYNRFLVCVFLDIVGAFNNVDHKVLTRELLTLGIPSSSI 46
+E++ I + + + V LD AF++V L + L G P + I
Sbjct: 1030 ISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWI 1084
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = -1
Query: 348 NSYRPIALTSCFGKLFEQMLKQRLEFYIESNKLLPSNQFGFRRGFSAAESMNNLYLDIHS 169
N +RPI+L K+ ++L RL+ I KL+ N +GF +G + + + IH
Sbjct: 386 NDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGFIKGKTIQDCPAWPFEYIHQ 443
Query: 168 AFAYNRFLVCVFLDIVGAFNNVDHKVLTRELLTLGIP 58
R +V + LD AF+ ++H + + +G P
Sbjct: 444 CQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFP 480
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 33.1 bits (72), Expect = 0.24
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 5/201 (2%)
Frame = -1
Query: 651 SSNPQSQVNFNIHVSNTHTHNEFLTKSFTLPELHSALNSRRDTAF-GLDNISYKMLKNLS 475
S NP+S T NE L + F E+ A+ G D + +
Sbjct: 865 SLNPESVTRL-FQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNW 923
Query: 474 VDVKKMLILILNLLWNASLIPPEWKIDCLVPILKPGKDNT-NHNSYRPIALTSCFGKLFE 298
+K +IL + + + L+P E D + +L P KD + YRPI+L + K+
Sbjct: 924 GTLKSDIILAVRNFFQSGLMP-EGVNDTAI-VLIPKKDQPIDLKDYRPISLCNVVYKVVS 981
Query: 297 QMLKQRLEFYIESNKLLPSNQFGFRRGFSAAESMNNLYLDIHSAFAYNR--FLVCVF-LD 127
+ L RL ++ L+ Q F +G ++ + HS + C + LD
Sbjct: 982 KCLVNRLRPILDD--LVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLD 1039
Query: 126 IVGAFNNVDHKVLTRELLTLG 64
+ A++ VD + L L LG
Sbjct: 1040 LSKAYDRVDWRFLELALNKLG 1060
>03_03_0228 + 15606909-15607166,15608712-15608822
Length = 122
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +2
Query: 371 GFSIGTRQSIFHSGGIRDAFQSRFNMRINIFFTSTERFFSILYEILS 511
GF+I T S+ +GGIR+ ++F + N+FF + E F+ + E L+
Sbjct: 61 GFTIPTGPSVLGAGGIRNF--AKFGGKSNVFFNTPEHNFANIREELA 105
>01_03_0149 +
13194866-13195012,13196576-13196828,13197810-13198173,
13198283-13198501,13199888-13200002,13200697-13200948,
13201149-13201442
Length = 547
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 642 PQSQVNFNIHVSNTHTHNEFLTKSFTLPELHSAL 541
PQ+ VNF V+ +TH + T S T+ E+ S++
Sbjct: 507 PQTVVNFARTVTTMYTHGDAFTSSHTIKEMISSI 540
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 521 AVSRLELRALCSSGKVKLLVRNSLCVCVFDTWILKLTCD 637
A++RL LR SS ++LVR +W++K+ CD
Sbjct: 64 ALARLSLRGPSSSLTARVLVRLFRSCSSSSSWLMKMICD 102
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 609 SNTHTHNEFLTKSFTLPELHSALNSRRDTAFGLDNISYKMLKNLSVDVKKMLI 451
SN THN+ K ++++ + + + I YK+L S+DV + LI
Sbjct: 151 SNCKTHNDARNKCEDFMNQRTSVSKKIEIVSKEEEIRYKILLTSSLDVVRFLI 203
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +3
Query: 93 LYGQHY*MLQQYQE-------KHRQGICYMQMHYEYLSKDYSYFQQQKNL 221
++ QH+ QQYQ+ H+Q Q Y++ + Y QQQ+NL
Sbjct: 169 IHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQNLQQQYQQQQQNL 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,069
Number of Sequences: 37544
Number of extensions: 316452
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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