Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d19f
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 69 3e-12
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 69 3e-12
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 68 6e-12
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 31 0.87
M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein ( C.ele... 30 2.0
L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal p... 30 2.0
AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein. 30 2.0
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 29 3.5
AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 28 8.1
AF043706-4|AAU87803.1| 394|Caenorhabditis elegans Hypothetical ... 28 8.1
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 69.3 bits (162), Expect = 3e-12
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Frame = -1
Query: 624 FNIHVSNTHTHNEFLTKS---FTLPELHSALNS-RRDTAFGLDNISYKMLKNLSVDVKKM 457
F VSN+ T + T + F E+ L S A G D IS LK+ +V +
Sbjct: 526 FKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDL 585
Query: 456 LILILNLLWNASLIPPEWKIDCLVPILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRL 277
+ N ++ +P WK I K G D N +YRPI L K+F + L R+
Sbjct: 586 ITDRFNRYLHSRNVPKPWKTSKTTLIFKKG-DRENLENYRPICLLPVLYKVFTKCLLNRM 644
Query: 276 EFYIESNKLLPSNQFGFRRGFSAAESMNNLYLDIHSAFAYNRFLVCVFLDIVGAFNNVDH 97
++ + P Q GFRR FS + +++L + Y L VF+D AF++V+H
Sbjct: 645 RRSLDEAQ--PVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEH 702
Query: 96 KVLTREL 76
+ + + L
Sbjct: 703 QAIWKSL 709
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 69.3 bits (162), Expect = 3e-12
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Frame = -1
Query: 624 FNIHVSNTHTHNEFLTKS---FTLPELHSALNS-RRDTAFGLDNISYKMLKNLSVDVKKM 457
F VSN+ T + T + F E+ L S A G D IS LK+ +V +
Sbjct: 265 FKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDL 324
Query: 456 LILILNLLWNASLIPPEWKIDCLVPILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRL 277
+ N ++ +P WK I K G D N +YRPI L K+F + L R+
Sbjct: 325 ITDRFNRYLHSRNVPKPWKTSKTTLIFKKG-DRENLENYRPICLLPVLYKVFTKCLLNRM 383
Query: 276 EFYIESNKLLPSNQFGFRRGFSAAESMNNLYLDIHSAFAYNRFLVCVFLDIVGAFNNVDH 97
++ + P Q GFRR FS + +++L + Y L VF+D AF++V+H
Sbjct: 384 RRSLDEAQ--PVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEH 441
Query: 96 KVLTREL 76
+ + + L
Sbjct: 442 QAIWKSL 448
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 68.1 bits (159), Expect = 6e-12
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 2/165 (1%)
Frame = -1
Query: 564 LPE-LHSALNS-RRDTAFGLDNISYKMLKNLSVDVKKMLILILNLLWNASLIPPEWKIDC 391
LPE + AL S A G D IS LK+ +V ++ N ++ +P WK
Sbjct: 377 LPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSK 436
Query: 390 LVPILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRLEFYIESNKLLPSNQFGFRRGFS 211
I K G D N +YRPI L K+F + L R+ ++ + P Q GFRR FS
Sbjct: 437 TTLIFKKG-DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGFRRSFS 493
Query: 210 AAESMNNLYLDIHSAFAYNRFLVCVFLDIVGAFNNVDHKVLTREL 76
+ +++L + Y L VF+D AF+ V+H+ + + L
Sbjct: 494 TIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSL 538
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 66.5 bits (155), Expect = 2e-11
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Frame = -1
Query: 582 LTKSFTLPELHS-ALNSRRDTAFGLDNISYKMLKNLSVDVKKMLILILNLLWNASLIPPE 406
L T ELH+ A+ A G D I+ ++ L + L + N+ + ++IP +
Sbjct: 324 LQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDK 383
Query: 405 WKIDCLVPILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRLEFYIESNKLLPSNQFGF 226
WK ++ I KP KD +SYRPI+L S KL E+ + +R++ IES P++Q GF
Sbjct: 384 WKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIES----PAHQHGF 439
Query: 225 RRGFSAAESMNNLYLDIHSAFAYN---RFLVCVFLDIVGAFNNVDHKVLTRELL 73
+ S ++ + DI + LD+ AF+ V K L +L+
Sbjct: 440 KPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLM 493
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 31.1 bits (67), Expect = 0.87
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
Frame = -1
Query: 726 NKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNTHTHNEFLTK----SFTLP 559
NK+ N++ KS + + SS Q+ ++ S++ N+ T SF
Sbjct: 714 NKSIVNDSEKSEIFAKIFASHYSDDSSQSQNSLHSPSPTSHSSLQNQTSTSLHLDSFQPY 773
Query: 558 ELHSALNSRRDTA-FGLDNISYKMLKNLSVDVKKMLILILNLLWNASLIPPEWKIDCLVP 382
+ S L+ F +Y +LK + + L +I + S IP WK ++P
Sbjct: 774 MIESVLSKLPPKCGFSPHCANYLVLKKCATPLAFPLSIIYKQSFADSKIPDCWKKAIIIP 833
Query: 381 ILKPGKDNTNHNSYRPIALTSCFGKLFEQMLKQRLEFYIESNKLLPSNQFGFRRG 217
I K GK L S +++ L+ R F ++ NK + N + G
Sbjct: 834 IPKKGK-------LAKFGLDSLTCSWYKEFLENR-TFSVKINKFVSKNSYPISSG 880
>M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein (
C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
Length = 211
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 744 KTIRKFNKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNT 601
KT +N TY NN +K + W+ + N F+ NP + N + T
Sbjct: 59 KTYELYNHTYMNN-MKHMLAAGWMDNSSNPFAYNPLQATSANFGETRT 105
>L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal
protein 5 protein.
Length = 200
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 744 KTIRKFNKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNT 601
KT +N TY NN +K + W+ + N F+ NP + N + T
Sbjct: 48 KTYELYNHTYMNN-MKHMLAAGWMDNSSNPFAYNPLQATSANFGETRT 94
>AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein.
Length = 200
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 744 KTIRKFNKTYHNNNIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNT 601
KT +N TY NN +K + W+ + N F+ NP + N + T
Sbjct: 48 KTYELYNHTYMNN-MKHMLAAGWMDNSSNPFAYNPLQATSANFGETRT 94
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 156 YMQMHYEYLSKDYSYFQQQKNLYGN-QIDLKVIIYLILYRTLIFVLTFAQKVYQN 317
Y Q ++Y D S QK L N +I LK+ L L R + + T K+Y+N
Sbjct: 146 YFQKIFQYRKFDNSKSSCQKKLLKNWKIFLKIRKMLSLSRNVYIIATIYVKIYKN 200
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 20 NIASASAVKMLDEGM-PRVNSSLVRTLWSTLLNAPTISRKTQTRNL 154
N+ +A ++ L++ + P++ L + +W+ +L P IS+K N+
Sbjct: 309 NVDAADGIRGLNQALVPKIEKLLRKGVWNDVLTLPDISQKCPILNI 354
>AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical
protein M151.6 protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 705 NIKSSTNSSWIQDFLNKFSSNPQSQVNFNIHVSNTHTHNEFLTKSFTLPELHSAL 541
N+ T WI+ ++ FS N Q+N T L K + LHS L
Sbjct: 152 NVPGFTIKKWIEHIIDVFSRNKDVQLNIRNAQGRNATEILELLKQINIVTLHSEL 206
>Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical
protein T21B4.14 protein.
Length = 426
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +2
Query: 398 IFHSGGIRDAFQSRFNMRINIFFTSTERFFS---ILYEILSKPKAVS----RLELRA 547
+F SGG + +Q+R IN T FFS I Y +SK VS RL++R+
Sbjct: 280 VFASGGFWETYQTRARSIINALTTFQILFFSATCIYYLFISKSSHVSAQTRRLQIRS 336
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 171 YEYLSKDYSYFQQQKNLYG-NQIDLKVIIYLIL 266
+EY+ D S + +Q N+YG + ID+K++++ +L
Sbjct: 307 FEYMKMDLSKYLEQ-NVYGLDSIDIKLLLFQLL 338
>AF043706-4|AAU87803.1| 394|Caenorhabditis elegans Hypothetical
protein ZC123.4c protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 171 YEYLSKDYSYFQQQKNLYG-NQIDLKVIIYLIL 266
+EY+ D S + +Q N+YG + ID+K++++ +L
Sbjct: 151 FEYMKMDLSKYLEQ-NVYGLDSIDIKLLLFQLL 182
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 171 YEYLSKDYSYFQQQKNLYG-NQIDLKVIIYLIL 266
+EY+ D S + +Q N+YG + ID+K++++ +L
Sbjct: 291 FEYMKMDLSKYLEQ-NVYGLDSIDIKLLLFQLL 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,729
Number of Sequences: 27780
Number of extensions: 320817
Number of successful extensions: 970
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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