Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d18r
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 323 2e-89
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 162 6e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 150 3e-37
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 1e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 88 2e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 80 3e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 3.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 5.4
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 9.5
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 323 bits (793), Expect = 2e-89
Identities = 154/181 (85%), Positives = 164/181 (90%)
Frame = -1
Query: 761 RGVTRSPPPLRGEIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNER 582
RG T S R EIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNER
Sbjct: 196 RGYTFSTTAER-EIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNER 254
Query: 581 FRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQ 402
FR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQ
Sbjct: 255 FRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQ 314
Query: 401 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 222
KEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKC
Sbjct: 315 KEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKC 374
Query: 221 F 219
F
Sbjct: 375 F 375
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 786 DYLMKILTERGYSFTTTAER 727
DYLMKIL ERGY+F+TTAER
Sbjct: 187 DYLMKILMERGYTFSTTAER 206
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 162 bits (393), Expect = 6e-41
Identities = 75/169 (44%), Positives = 111/169 (65%)
Frame = -1
Query: 725 EIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 546
EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P
Sbjct: 212 EIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEM 271
Query: 545 LGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIK 366
+G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ +
Sbjct: 272 MGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQ 331
Query: 365 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 219
+KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 332 VKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 150 bits (363), Expect = 3e-37
Identities = 75/172 (43%), Positives = 113/172 (65%), Gaps = 12/172 (6%)
Frame = -1
Query: 725 EIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 546
E VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 207 ETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHL 266
Query: 545 LGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL------ 384
+G E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 267 VGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVL 326
Query: 383 --APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 246
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 327 HGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (292), Expect = 1e-28
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Frame = -1
Query: 656 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 504
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 503 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 330
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 329 VWIGGSILASLSTFQQMWISKEEYDESG 246
VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -1
Query: 527 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 348
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 347 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 222
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 87.8 bits (208), Expect = 2e-18
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Frame = -1
Query: 722 IVRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQV 603
IV +IKE +CYV+ +F+++M + LE Y LPD QV
Sbjct: 214 IVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQV 273
Query: 602 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 423
+ + NERF PE LF PS + + GI E V S+ +I+ L N V GG +P
Sbjct: 274 LNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFP 333
Query: 422 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 243
G R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G
Sbjct: 334 GFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGA 392
Query: 242 GIVHRK 225
I+ RK
Sbjct: 393 NIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 80.2 bits (189), Expect = 3e-16
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 19/193 (9%)
Frame = -1
Query: 749 RSPPPLRGEIVRDIKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNER 582
R+ P + IKE+ CYV D +E + L+ + E G TI G ER
Sbjct: 227 RNEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFER 286
Query: 581 FRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 405
F PE F P + + E V N + +D+RK LY N V+SGG+T++ +R+
Sbjct: 287 FLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRL 346
Query: 404 QKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 267
Q+++ + I + +I+ ++ +VW GGS+LA F +K
Sbjct: 347 QRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTK 406
Query: 266 EEYDESGPGIVHR 228
+Y+E G I R
Sbjct: 407 ADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = -1
Query: 587 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 408
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 407 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 243
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 473 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 303
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 302 SLSTFQQMWISKEEYDESGPGIVHRK 225
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 326 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 225
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 773 RSSPRGVTRSPPPLRGEIVRDIKEKL 696
R S G +RSPPP R VR I+++L
Sbjct: 91 RYSSVGRSRSPPPSRERSVRSIEQEL 116
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 401 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 291
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.4
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Frame = -1
Query: 770 SSPRGVTRSPPPLRGEIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 591
++P+ T PP+ DIK+K+ ++ E + L LP I
Sbjct: 274 ATPQPSTFPQPPVESHSSFDIKQKILHLL----NEGNEPKSPIQLPPVSNLPLNPPIQSS 329
Query: 590 NERFRCPEALFQP-SFLGME----SCGIHETVYNSIMKCDVDI-----RKDLYANTVMSG 441
N R F P ++LG++ S V + M + + ++ +Y+N +
Sbjct: 330 NSRLSHDNNSFDPFAYLGLDPKNPSASFPRVVSQNNMLTNKPVLNNHFQQSMYSNLLKDQ 389
Query: 440 GTTMYPGIADRMQKEITALAPSTIKIKIIAPP 345
+ + A M + +PST+ ++ PP
Sbjct: 390 NSVQHLFAASDMPSPMELPSPSTVYHQVFYPP 421
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 163 ELGRAQHHTAPGSRGRAA*KHLRWT 237
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 522 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 394
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,503
Number of Sequences: 5004
Number of extensions: 53617
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -