Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d16r
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 30 0.46
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 28 1.9
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 28 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.2
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 26 5.7
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 5.7
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 7.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.9
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 472 RGREASVGRDAAYDVHRSSRITVG*ANSGPPQDRIV 579
RGRE S R++ D+ RSS ++ G + S P+ R++
Sbjct: 684 RGRERSSNRNSYSDLSRSSSLSRGRSRSYTPEGRLI 719
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 170 HCPLTPTSSHPRQTMLLATVK 232
HCPLTP + H LLA++K
Sbjct: 205 HCPLTPDTEHLVDEKLLASMK 225
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 417 AGLV--EAAGLVGRTYTFSNDQAV-EAIGWGAVSSTDPVSSIQLRRTVIWVV 271
AGL+ + G VGR F + +++ + STDP S+ + R+ +W V
Sbjct: 510 AGLLYSKRLGPVGRAMIFQQTHTLFKSLSYLKTESTDPFSNKRTRKAALWCV 561
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 89 PSAQPSAQENTPTTAPLSRIGLPLSP*HCPLTPTSSHP 202
P AQP+A +P +AP +P P P P S P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 PSAQPSAQENTPTTAPLS-RIGLPLSP*HCPLTPTSSHPRQTMLLATVKPSSLYLFEHIC 265
PS P + +TP T P+S G+P S +T S++ QT+ + S+ ++
Sbjct: 72 PSTAPGSAGSTPKTTPVSLNAGVPPSNTGANITTNSNNNAQTI---SSSSQSVGHIDNPS 128
Query: 266 WSTTHITVRLS*IEDTG 316
TH VRLS TG
Sbjct: 129 GLGTHGKVRLSIKLSTG 145
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.1 bits (57), Expect = 3.2
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Frame = +1
Query: 331 GSPSNRFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 510
GS S NGL+ S +A SF T + ++ EN G + S + A
Sbjct: 25 GSKSASTNGLLSAASSAAG---SSFGLTPSAI-LQQKHENAQQ-GKKQNNSKSFSKKPAI 79
Query: 511 DVHRSSRITVG*ANSGPPQDRIVGIV--SSIKTRSCRQNCISR*NTAPASMSEHTAS 675
DVH + +GP + RIV V ++ T + +SR + P S S +S
Sbjct: 80 DVHSEDAFPTLLSKTGPSKPRIVSWVRKTASNTSVAGSDSVSR-DKIPFSASSRASS 135
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 564 WRARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTRF 433
W +R G A + G Y++S I + S + AND+ R+
Sbjct: 341 WTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRY 384
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 92 SAQPSAQENT---PTTAPLSRIGLPLSP*HCPLTPTSSHPRQTMLLATVKPSS 241
+A PS +NT P+T P + P P P+++ + L +T+KPS+
Sbjct: 361 AAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPST 413
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 170 HCPLTPTSSHPRQTMLLATVK 232
HCPLTP+++H + LA +K
Sbjct: 205 HCPLTPSTTHIVNSDSLALMK 225
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 RVLMPGYRPSAQPSAQENTPTTAPLSRIGLPLSP*HCPLTPT--SSHPRQT 211
+ P Y QP+ + P AP S L L H +P+ S PR++
Sbjct: 310 KAAFPNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRS 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,678,781
Number of Sequences: 5004
Number of extensions: 80387
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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