Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d16r
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    77   2e-16
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 77.0 bits (181), Expect = 2e-16
 Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 12/253 (4%)
 Frame = -3

Query: 756 DPSQRIGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCFYTGNNAH 577
           +PS RI GGT   I  +P    +      G+    CG +I+++  +L+AA C    N   
Sbjct: 157 NPS-RIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCIIDENTTK 212

Query: 576 DAVLWRARVGSAYSNSGGT-MYIISRITPHTSFSPTTR----ANDIAVLRTRFNIQFVAG 412
            A++      S+ + +  T ++ I+++  H  +    +     NDIA+L+T  +I+F   
Sbjct: 213 LAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GD 271

Query: 411 LVEAAGLVGRTYTFS-NDQAVEAIGWGAVSSTDPVSSIQLRRTVIWVVDQQICSNRYSEL 235
            V  A L  + +  S     V  +GWG  S    +S I L++T + ++ Q  C   Y   
Sbjct: 272 KVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHI-LQKTTLNMLTQVECYKYYGN- 329

Query: 234 GFTVASNMVCLGWLDVGVRGQCQGDNGSPIL-DNGAV-----VGVFSWAEGCALGRYPGI 73
              +  N +C        +  CQ D+G P+L  N        +G+ SW   C  G+YP  
Sbjct: 330 ---IMVNAMCAY---AKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAEC--GKYPNG 381

Query: 72  NTRLSPYLQWVVS 34
           NT++  Y+ W+VS
Sbjct: 382 NTKVGSYIDWIVS 394


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 282 IWVVDQQICSNRYSELGFT 226
           ++ +D+Q+CS R +  G+T
Sbjct: 166 LYPLDRQVCSLRMASYGWT 184


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 282 IWVVDQQICSNRYSELGFT 226
           ++ +D+Q+CS R +  G+T
Sbjct: 166 LYPLDRQVCSLRMASYGWT 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,106
Number of Sequences: 438
Number of extensions: 5713
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)