Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d16f
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.37 
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    28   1.5  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   4.6  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   6.1  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 366 RGREASVGRDAAYDVHRSSRITVG*ANSGPPQDRIV 259
           RGRE S  R++  D+ RSS ++ G + S  P+ R++
Sbjct: 684 RGRERSSNRNSYSDLSRSSSLSRGRSRSYTPEGRLI 719


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 668 HCPLTPTSSHPRQTMLLATVK 606
           HCPLTP + H     LLA++K
Sbjct: 205 HCPLTPDTEHLVDEKLLASMK 225


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 421 AGLV--EAAGLVGRTYTFSNDQAV-EAIGWGAVSSTDPVSSIQLRRTVIWVV 567
           AGL+  +  G VGR   F     + +++ +    STDP S+ + R+  +W V
Sbjct: 510 AGLLYSKRLGPVGRAMIFQQTHTLFKSLSYLKTESTDPFSNKRTRKAALWCV 561


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
 Frame = -2

Query: 507 GSPSNRFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 328
           GS S   NGL+   S +A     SF  T   + ++   EN    G  +    S  +  A 
Sbjct: 25  GSKSASTNGLLSAASSAAG---SSFGLTPSAI-LQQKHENAQQ-GKKQNNSKSFSKKPAI 79

Query: 327 DVHRSSRITVG*ANSGPPQDRIVGIV--SSIKTRSCRQNCISR*NTAPASMSEHTAS 163
           DVH         + +GP + RIV  V  ++  T     + +SR +  P S S   +S
Sbjct: 80  DVHSEDAFPTLLSKTGPSKPRIVSWVRKTASNTSVAGSDSVSR-DKIPFSASSRASS 135


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 274 WRARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTRF 405
           W +R G A +   G  Y++S I  + S +    AND+     R+
Sbjct: 341 WTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRY 384


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 668 HCPLTPTSSHPRQTMLLATVK 606
           HCPLTP+++H   +  LA +K
Sbjct: 205 HCPLTPSTTHIVNSDSLALMK 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,924
Number of Sequences: 5004
Number of extensions: 67604
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)