Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d16f
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 60 1e-09
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 56 2e-08
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 31 0.61
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 29 4.3
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 29 4.3
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 29 4.3
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 29 4.3
Z46794-7|CAA86777.1| 120|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical p... 28 7.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 9.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 9.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 9.9
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 60.5 bits (140), Expect = 1e-09
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 1/201 (0%)
Frame = +1
Query: 97 IGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCFYTGNNAHDAVLW 276
IGG P S+P+ LL+ G HRCGGS++ N +L+AA CF +
Sbjct: 59 IGGSESSP-HSWPWTVQLLSRLGH----HRCGGSLIDPNFVLTAAHCFAKDRR---PTSY 110
Query: 277 RARVGSAYSNSGGTMYIISRITPHTSFS-PTTRANDIAVLRTRFNIQFVAGLVEAAGLVG 453
RVG S S G+ + ++ ++ H ++ + D A++R V A +
Sbjct: 111 SVRVGGHRSGS-GSPHRVTAVSIHPWYNIGFPSSYDFAIMRIH---PPVNTSTTARPICL 166
Query: 454 RTYTFSNDQAVEAIGWGAVSSTDPVSSIQLRRTVIWVVDQQICSNRYSELGFTVASNMVC 633
+ ++ GWG+ +S+ LR + ++ CS+ + +G +M+C
Sbjct: 167 PSLPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLC 226
Query: 634 LGWLDVGVRGQCQGDNGSPIL 696
G+ G CQGD+G P++
Sbjct: 227 AGY-SYGKIDSCQGDSGGPLM 246
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 56.4 bits (130), Expect = 2e-08
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 1/217 (0%)
Frame = +1
Query: 43 LFFLYVSAVSATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAIL 222
L ++ V+A A R+ GG ++P+ AL N H CG SIL + ++
Sbjct: 9 LRYVEVNARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKA---HHCGASILDKTHLI 65
Query: 223 SAASCFYTGNNAHDAVLWRARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTR 402
+AA CF + + ++ ++ + RI + + ++DIA+L
Sbjct: 66 TAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKDIF-SHDIAILEIP 124
Query: 403 F-NIQFVAGLVEAAGLVGRTYTFSNDQAVEAIGWGAVSSTDPVSSIQLRRTVIWVVDQQI 579
+ I+F + L + + ++ + GWG++ + +L+ +I ++++
Sbjct: 125 YPGIEF-NEYAQPICLPSKDFVYTPGRQCVVSGWGSMGLR---YAERLQAALIPIINRFD 180
Query: 580 CSNRYSELGFTVASNMVCLGWLDVGVRGQCQGDNGSP 690
C N S++ +++ + C G+L+ G+ CQGD+G P
Sbjct: 181 CVNS-SQIYSSMSRSAFCAGYLEGGI-DSCQGDSGGP 215
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 103 GGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCF 240
G T P P+A + G F CGG+++T +L+AA CF
Sbjct: 34 GNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = -1
Query: 409 C*IWS*ERQCRWPGSWERS*CGA*CGL*CTSFLQNYCRLSQLWPATRPHRGHCFQYKNKK 230
C IW+ QCR + C CG+ +++ C A RG C KNK
Sbjct: 718 CPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECL--KNKW 775
Query: 229 LPTKLHFSLEYC 194
+P S C
Sbjct: 776 MPENCRRSCNTC 787
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 177
FF Y+ + S PS Q+ GG T++P TS P +T + GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 177
FF Y+ + S PS Q+ GG T++P TS P +T + GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 245 LETMPTMRSCGGPELAQPTVILEERCTS*AASRPTLASLPRPGPTTLPFSGPDST 409
L T+PT P L P ++ + PTL +LP P T P P +T
Sbjct: 207 LWTLPTQPPAWSPMLDSPIKPIQNSMFPTFPTMPTLPTLPTLAPFTFPTLPPPTT 261
>Z46794-7|CAA86777.1| 120|Caenorhabditis elegans Hypothetical
protein R06F6.7 protein.
Length = 120
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 447 KACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAYDVHR 316
+A + D T E+ + P++G ++GPG R G + YD+ +
Sbjct: 64 EAPNTDSTPVEILAAAKPDSGILLGPGDNRVKRDGLPSFYDIRK 107
>Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical
protein D1086.10a protein.
Length = 177
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 248 ETMPTMRSCGGPELAQPTVILEERCTS*AASRPTLASLPRPGPTTLPF----SGPDSTFS 415
E+ P+ +S P A T E+ + + S PT + PG T LPF + P S S
Sbjct: 42 ESSPS-QSTDSPSTASSTAT--EQIFTPSTSEPTSTTTTAPGTTELPFEWNVTAPPSVVS 98
Query: 416 SW 421
W
Sbjct: 99 KW 100
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 70 SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
S +P++R+ L+P T Y +N G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 70 SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
S +P++R+ L+P T Y +N G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 70 SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
S +P++R+ L+P T Y +N G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 70 SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
S +P++R+ L+P T Y +N G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 530 DTGSVEDTAPHPIASTAWSLLKV*VRPTRPAASTRPA 420
D G VE+TAP P +KV VRP RP+
Sbjct: 1973 DGGMVENTAPQPTTYQRPHPIKVQVRPATKPYRPRPS 2009
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,271
Number of Sequences: 27780
Number of extensions: 413924
Number of successful extensions: 1019
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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