Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d13r
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 155 6e-39
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 29 0.64
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 29 0.64
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.5
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 5.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.9
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 7.8
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 155 bits (376), Expect = 6e-39
Identities = 77/156 (49%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Frame = -2
Query: 691 YGMGTSVDRXSASTEYYXRGDYVPGVWVDGMDVLATREAARFAIEYCNAGKGPLVMEMET 512
YGMGTS +R SA TE+Y RG Y+PG+ V+GMDVLA +A++FA +Y PL+ME T
Sbjct: 244 YGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVT 303
Query: 511 YRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEV 332
YRY GHSMSDPGT+YR+R+EVQ+VR RDPI K+ I+ + ++LK+I+ ++R V
Sbjct: 304 YRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMV 363
Query: 331 DEATKQSKTEP-EVGIEE-LSADIYYKNLEP-FVRG 233
DE + ++ P IEE L +D+Y EP + RG
Sbjct: 364 DEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARG 399
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 310 KTEPEVGIEELSADIYYKNLEPFVRGIHPAAPLKHLEVQPRN 185
K EP+VGI+E A Y+ L + +H + + H +++P N
Sbjct: 102 KIEPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 41 VYKNK*FLPKVLPYKCHSLKKITKVLIFF*HCNYTVYDVNIIYIE----VLVVARLD 199
++K + FL K L Y+C S K K+L+ H VY + IY E L++ARL+
Sbjct: 206 MHKQESFLRKQLLYQCKSCVKPKKILVDLFHRINIVYFRSSIYDEQSLTSLILARLN 262
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 22.6 bits (46), Expect(2) = 4.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 197 PTSQPLKPQYRLYLHHTQ 144
P +QPLKPQ +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268
Score = 21.8 bits (44), Expect(2) = 4.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 260 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 171
Q+ G + P P G P GP + ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 433 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 531
SA PP P S+ +T R P S S P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -2
Query: 457 DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 278
+E + +R+ P+ S + +L+ +T Q D D + +VD+ QS T+P +
Sbjct: 838 EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894
Query: 277 SADIYY 260
+ +Y+
Sbjct: 895 PSSLYH 900
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 536 SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 432
+ GDG DV ++ D+G +V +E R A AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 20 KVTYCVAVYKNK*FLPKVLPYKCHSLKK 103
K YC V F +VLPYK SL K
Sbjct: 1388 KYPYCQVVLNEPNFYFQVLPYKGESLSK 1415
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 397 LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELS 275
LN++ + + +AK ++ V+E TKQ + + + + ELS
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,408
Number of Sequences: 5004
Number of extensions: 51557
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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