Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d13f
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 182 6e-47
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.54
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.6
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 1.6
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 27 2.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.0
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 8.8
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 8.8
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 8.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.8
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 25 8.8
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 182 bits (442), Expect = 6e-47
Identities = 83/151 (54%), Positives = 108/151 (71%)
Frame = +3
Query: 300 HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 479
+K+D P+T +T + L LYE++ +RR+E A LYK K IRGFCHL GQEAVA G
Sbjct: 62 YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120
Query: 480 MRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGG 659
+ A+ DS+IT+YRCHG+ Y G+S+ ++ EL GR+ G S+GKGGSMH++ +NFYGG
Sbjct: 121 IEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGG 180
Query: 660 NGIVGAQVPLGAGVAFAHKYRADGGVTFALY 752
NGIVGAQ+PLGAG+ FA KY TFALY
Sbjct: 181 NGIVGAQIPLGAGIGFAQKYLEKPTTTFALY 211
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.54
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = -1
Query: 697 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYA 518
P P + AP +P P L P + P + PV P S PS TP V A
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP---VPVPTAKAPPV--PAPSSEAPSVSTPRSSVPSPHSNA 1263
Query: 517 VITESASRIAALIPTATA 464
+ ++S +A+ P T+
Sbjct: 1264 SPSPTSSSMASAAPARTS 1281
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 629 HGTSLAPGATGPAPRQLRE--HPQHTNAHEISPS 534
H S AP ++ P L HP HTNA +++ S
Sbjct: 83 HSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGS 116
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 746 SERDSAVGAVLVGEGHSSSQRDLRTNNPVATI 651
S+ +S VL HS+SQ DLR + V+T+
Sbjct: 402 SQNESIESNVLFPGNHSNSQTDLRNGDAVSTV 433
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 436 PRMIFSLYRFPDAVSILRNIV 374
PR++F + PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.8
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = -1
Query: 628 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 449
+E P+ +PV P +E TP TL+P+ + + E + A AS Y
Sbjct: 41 LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100
Query: 448 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 335
+ ++ S+ S+LR S S LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 721 RYLWAKAT--PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSEST 569
R LW ++T APN +P P K + ++P P +P L + S +T
Sbjct: 574 RKLWPQSTLIQAPNSDDEENVPSPSPKKKVVSPIKPLSPSRRPPLTSLYSGTT 626
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 8.8
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -1
Query: 613 PREQPVLRPVSSESTPSTL-TPMR*VHP*QR----YAVITESASRIAALIPTATASCPEY 449
PR++P L P+S + PST+ T R Q+ YA I E S + A++S P+
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFEPNSGLGTSSEGASSSFPDV 371
Query: 448 R*QKPRMIFSLYRFPD 401
+ Y PD
Sbjct: 372 DPNLAQNGVPYYSLPD 387
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 270 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQ 371
A F+IKP L Q P + L E ++ LY++
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYDE 376
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 297 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 428
LH L + P ++TLT+E AL+ E LT E + G Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 697 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 599
P P A +IPLPP + PP PR P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 438 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 343
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 438 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 343
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 270 ATFEIKPYKLHKLDQGPATSATLTSEDA 353
A F++ P+K+ LD + S LT +DA
Sbjct: 41 APFDVPPFKVESLDVLISQSEQLTKQDA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,031
Number of Sequences: 5004
Number of extensions: 61796
Number of successful extensions: 229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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