Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d12f
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1469 + 27345430-27345534,27345690-27345763,27345852-273459...    30   1.7  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    30   1.7  
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           29   3.0  
12_02_1284 + 27548813-27549826                                         29   5.2  
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    28   9.1  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    28   9.1  
04_03_0368 + 15004949-15005659,15005789-15005848                       28   9.1  
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503...    28   9.1  

>08_02_1469 +
           27345430-27345534,27345690-27345763,27345852-27345996,
           27346359-27346460
          Length = 141

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 328 VAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLR 498
           +A E ++DE G + L   A C+  D +G +  ++S +     K+ +   DDD  N R
Sbjct: 24  LATESLMDEQGLLQLQLHASCMVHDATGAI-LQASSISMIRNKIDQYTNDDDAGNAR 79


>06_01_0027 -
           271199-271424,271628-272095,272721-273018,273133-273343,
           273427-274124,274921-274969,276059-276112,276244-276275,
           276319-276484,276563-276628,276717-276812,276868-276957,
           277302-277398,277496-277575,277709-277753,278006-278134,
           278593-278722,278888-279222,279918-280053,280149-280328,
           280422-280679,280752-281137
          Length = 1409

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 262 ARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESG 411
           +R C +G+    C+ ++ G C  +  E+L ES         G ++ ++SG
Sbjct: 736 SRYCYEGADEEDCIIEMDGRCLYSSIELLIESAGCSSVAAVGVMAKEQSG 785


>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 388 CLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLH-PQLSEPSP 528
           C++A  S    CK S     +P + + C D D C LR+  P+L +  P
Sbjct: 299 CVNATSSPGYICKCSDHYDGNPYIADGCQDIDECQLRIQFPELRDVYP 346


>12_02_1284 + 27548813-27549826
          Length = 337

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 478 DDLCNLRLHPQLSEPSPD--VTESPGVRPPITSSPT 579
           DD C+ R   QL+  +PD  V  +P  RP + + PT
Sbjct: 130 DDHCHARTLAQLAAAAPDLPVVTTPNARPVLAALPT 165


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 520 PSPDVTESPGVRPPITSSPT 579
           P P V   PG  PP+ S PT
Sbjct: 298 PEPPVASPPGSEPPVASPPT 317


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 70  LLRIPRNPCVVTVQF*SWWCKNKVGDRRRRSELYLNDRAESGLGSLQNTDDMRLSRG 240
           L+R PR P     Q      K+K G+R     L  +DRA +GLG+ +    M  +RG
Sbjct: 287 LVRDPRRPA----QTLGHLLKSKAGERVAVLLLVWDDRAATGLGAARRDGRMGAARG 339


>04_03_0368 + 15004949-15005659,15005789-15005848
          Length = 256

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 432 TSATSAPESNRVLLRRRPV 488
           TS TS+P + R LLRRRP+
Sbjct: 211 TSTTSSPTAGRRLLRRRPM 229


>02_05_1048 +
           33748260-33748433,33748886-33748978,33750174-33750371,
           33750502-33750675,33750769-33750875,33751233-33751564,
           33751654-33752147
          Length = 523

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 364 VVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLHPQL 513
           V  D T G  S     ++QC+SS +     K+I+C  D  L  L L P +
Sbjct: 236 VASDFTGGQASIKRRHILQCQSSLLSKNFEKLIQC--DQRLNYLSLQPYM 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,575
Number of Sequences: 37544
Number of extensions: 366469
Number of successful extensions: 1331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)