Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d12f
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 50 1e-06
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 50 1e-06
Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical pr... 31 0.87
AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical ... 31 0.87
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 2.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.7
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 29 3.5
Z70680-6|CAC42260.1| 318|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical p... 29 4.7
AF022981-11|AAG24207.1| 746|Caenorhabditis elegans Hypothetical... 29 4.7
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.1
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 28 8.1
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 28 8.1
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 28 8.1
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 28 8.1
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.1
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 286 SNGTCVTQVGGYCFVAVEEVLDESGSVVLD-RTAGCLSADE-SGL--MQCKSSQVPHQHP 453
+N TCV Q G C+ AVEEV +++ + GC + + SG + C S + H P
Sbjct: 79 NNMTCVKQDGAACYHAVEEVYNKAEKRMETLHKWGCATLERGSGASHLTCNSWRAAHHSP 138
Query: 454 KVIECCYDDDLCNLRLHP 507
K I CCY+ + CN L P
Sbjct: 139 KSIGCCYEGNYCNKNLIP 156
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 286 SNGTCVTQVGGYCFVAVEEVLDESGSVVLD-RTAGCLSADE-SGL--MQCKSSQVPHQHP 453
+N TCV Q G C+ AVEEV +++ + GC + + SG + C S + H P
Sbjct: 79 NNMTCVKQDGAACYHAVEEVYNKAEKRMETLHKWGCATLERGSGASHLTCNSWRAAHHSP 138
Query: 454 KVIECCYDDDLCNLRLHP 507
K I CCY+ + CN L P
Sbjct: 139 KSIGCCYEGNYCNKNLIP 156
>Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 241 LRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTA--GCLSADESGL 414
++C C+GA D + G T V + VE+ + +++R A C++ +G
Sbjct: 120 IQCVCSGAHCKNDKTCVGELCTFVENHVTEQVEQGCTNASVPLIERRAIGSCMAPPITGA 179
Query: 415 MQCKSSQVPHQHPKVIECCYDDDLCN 492
M ++ H V C D CN
Sbjct: 180 MHHTVAKDAHSLLGVESCICGTDYCN 205
>AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 241 LRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTA--GCLSADESGL 414
++C C+GA D + G T V + VE+ + +++R A C++ +G
Sbjct: 120 IQCVCSGAHCKNDKTCVGELCTFVENHVTEQVEQGCTNASVPLIERRAIGSCMAPPITGA 179
Query: 415 MQCKSSQVPHQHPKVIECCYDDDLCN 492
M ++ H V C D CN
Sbjct: 180 MHHTVAKDAHSLLGVESCICGTDYCN 205
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +1
Query: 226 RLSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADE 405
R+ R + ECA R D SS+ TC+ G+ + DES + C+ +
Sbjct: 173 RVCRAVVNECAEGRH--DCSSHATCIDTADGFTCRCKDSYRDESSDTLKHPGKNCVRTVQ 230
Query: 406 SGLMQCKSSQVPHQHPKVIECC 471
+C S P E C
Sbjct: 231 PDPPECDVSDPMSCDPAKREVC 252
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +1
Query: 226 RLSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADE 405
R+ R + ECA R D SS+ TC+ G+ + DES + C+ +
Sbjct: 757 RVCRAVVNECAEGRH--DCSSHATCIDTADGFTCRCKDSYRDESSDTLKHPGKNCVRTVQ 814
Query: 406 SGLMQCKSSQVPHQHPKVIECC 471
+C S P E C
Sbjct: 815 PDPPECDVSDPMSCDPAKREVC 836
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +1
Query: 226 RLSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADE 405
R+ R + ECA R D SS+ TC+ G+ + DES + C+ +
Sbjct: 173 RVCRAVVNECAEGRH--DCSSHATCIDTADGFTCRCKDSYRDESSDTLKHPGKNCVRTVQ 230
Query: 406 SGLMQCKSSQVPHQHPKVIECC 471
+C S P E C
Sbjct: 231 PDPPECDVSDPMSCDPAKREVC 252
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +1
Query: 226 RLSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADE 405
R+ R + ECA R D SS+ TC+ G+ + DES + C+ +
Sbjct: 757 RVCRAVVNECAEGRH--DCSSHATCIDTADGFTCRCKDSYRDESSDTLKHPGKNCVRTVQ 814
Query: 406 SGLMQCKSSQVPHQHPKVIECC 471
+C S P E C
Sbjct: 815 PDPPECDVSDPMSCDPAKREVC 836
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +1
Query: 226 RLSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADE 405
R+ R + ECA R D SS+ TC+ G+ + DES + C+ +
Sbjct: 757 RVCRAVVNECAEGRH--DCSSHATCIDTADGFTCRCKDSYRDESSDTLKHPGKNCVRTVQ 814
Query: 406 SGLMQCKSSQVPHQHPKVIECC 471
+C S P E C
Sbjct: 815 PDPPECDVSDPMSCDPAKREVC 836
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 190 SGLG-SLQNTDDMRLSRGLRCECAGARACPDGSSNGTCVTQVGGY-CFVAVEEVLDESGS 363
SG G + + DM + RC+ G + C DGS C Y C +EE ++
Sbjct: 124 SGFGFACTGSIDMIIPSSKRCD--GLKDCSDGSDEENCKECQSIYSCRAHIEEESEKKDK 181
Query: 364 VVLDRTAGCLSADE--SGLMQC 423
+ T CL+A++ +G+ C
Sbjct: 182 TSVLPTLICLTAEKLCNGVENC 203
>Z70680-6|CAC42260.1| 318|Caenorhabditis elegans Hypothetical
protein C25G4.11 protein.
Length = 318
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 136 KVGDRRRRSELYLNDRAESGLGSLQNTDDMRLSRGLRCECAGARACPDGSS---NGTCVT 306
K G + + +LN +E +Q++ ++ +G EC ++ C DG S N C
Sbjct: 74 KDGSQISKGSQFLNTTSEKAY-KIQHSIEVDYEKGCSGECDDSKPCGDGFSCVDNQCCSC 132
Query: 307 QVGGYCFVAVEEVLDESG 360
+ + V DESG
Sbjct: 133 RREEFTLVLRNLTFDESG 150
>Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical
protein R07B1.8 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/90 (20%), Positives = 32/90 (35%)
Frame = +1
Query: 295 TCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCY 474
+CV G + A +++ + + T L ES C H K+ + C+
Sbjct: 11 SCVQLTTGQFYCA--DLIQQCAKSAAEYTEQILQYKESAFKSCVRRPACHTERKIFDECF 68
Query: 475 DDDLCNLRLHPQLSEPSPDVTESPGVRPPI 564
D + + P S D +PP+
Sbjct: 69 DASVSATHISPPQESTSNDGETRKVTQPPM 98
>AF022981-11|AAG24207.1| 746|Caenorhabditis elegans Hypothetical
protein W03F9.4 protein.
Length = 746
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 256 AGARACPDGSSNGTCVT 306
AG ACPDGS+ G C T
Sbjct: 683 AGGFACPDGSNYGVCYT 699
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 502 HPQLSEPSPDVTESPGVRPPITSSP 576
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 502 HPQLSEPSPDVTESPGVRPPITSSP 576
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 520 PSPDVTESPGVRPPITSSPT 579
P PDVTE PP+ SSPT
Sbjct: 768 PLPDVTEPKLYLPPVPSSPT 787
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 520 PSPDVTESPGVRPPITSSPT 579
P PDVTE PP+ SSPT
Sbjct: 768 PLPDVTEPKLYLPPVPSSPT 787
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 48 NVYQCAPTVTYPEKSVRCDCP 110
N+++C P++ + E S+ CD P
Sbjct: 335 NIFECPPSLVFNENSLICDYP 355
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 520 PSPDVTESPGVRPPITSSPT 579
P PDVTE PP+ SSPT
Sbjct: 767 PLPDVTEPKLYLPPVPSSPT 786
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 520 PSPDVTESPGVRPPITSSPT 579
P PDVTE PP+ SSPT
Sbjct: 696 PLPDVTEPKLYLPPVPSSPT 715
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 502 HPQLSEPSPDVTESPGVRPPITSSP 576
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,105
Number of Sequences: 27780
Number of extensions: 273222
Number of successful extensions: 981
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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