Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d12f
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 33  ASEYVNVYQCAPTVTYP 83
           A++ + +Y C P  TYP
Sbjct: 224 ATKVLKMYACCPNDTYP 240


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 115 KTGQSQRTDFSGYVTVGA 62
           K GQ + TDF   V +GA
Sbjct: 190 KNGQPKLTDFGSSVLIGA 207


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 224 MSSVFCSEPSPDSALSFKYNSERRR 150
           MS V CS P   +  S K +  RRR
Sbjct: 387 MSCVACSPPPRQTPPSRKESGRRRR 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,335
Number of Sequences: 438
Number of extensions: 2926
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)