Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d08f
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067... 30 2.1
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 3.6
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.6
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 6.4
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 28 6.4
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 28 6.4
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 28 8.4
04_04_0991 - 29969162-29969912,29970097-29970368 28 8.4
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 28 8.4
>11_04_0289 -
15804766-15804977,15805742-15805862,15806541-15806776,
15807639-15807766,15807873-15807910,15808041-15808129,
15808669-15808774,15811395-15811580
Length = 371
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 205 SLQRKGQEKQ--KIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRH*YXXXXXXXKPIQIP* 32
S++R EK + L +RK W+ R+L+T+ +QRH Y Q+P
Sbjct: 128 SVRRNQAEKHCSRASSLVSNRKKIWDSRSLSTRGLAPVTAQQRHHYITSILARMDYQVPS 187
Query: 31 LQPFSSTIKN 2
Q I N
Sbjct: 188 PQAEGEDISN 197
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 82 ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEA 258
A G L +++S P SLS + S +F SLL S G S+ L+T P + P +
Sbjct: 4 APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51
Query: 259 VVEVYISGISSLG 297
Y G+SS G
Sbjct: 52 SPSSYFGGVSSSG 64
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 307 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 405
DF YP+ EY P FDV H +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +1
Query: 217 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 396
N +L PF TP+ + ++ + + G SAD PL D+ +P + ++ QR
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307
Query: 397 TNGGNKLVNINLSDSDQLLSYSNVLGDL 480
+ +N L D D + + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 58 ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 219
I S +G+ +SG+L L + + + G++ + + +E+ S + L E+ W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 200 STERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKT 48
S E P A N +F L LLE KL+ GLW+ + + ++++ KT
Sbjct: 100 SVESP--APNHTFPSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKT 148
>12_01_0673 -
5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 475 DLDIPKVKKQSLQHLKSSVEEDFQFLS 555
D+DI KV K S QHL + ++ F+F S
Sbjct: 551 DIDIMKVLKLSYQHLPTELQICFRFCS 577
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 448 LLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNIID 627
LLS LG LD + Q LQHL +S+ ++ A L A + +++ + +
Sbjct: 164 LLSAVASLGSLDTALRQFQLLQHLLNSITSSSSDVAATAGLMATNLAATNTMVNSSSNVA 223
Query: 628 FYNLRINSL-HA 660
+ ++N+L HA
Sbjct: 224 SFQEQMNALAHA 235
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 499 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 663
K L HL+S EED Q L+E L +E+ A+ A N+ + + +H +
Sbjct: 157 KSDLNHLRSVPEEDGQALAEKEGLSF----LETSALEALNVEKAFQTILKDIHQI 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,838
Number of Sequences: 37544
Number of extensions: 317140
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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