Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05r
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...   148   1e-36
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    31   0.29 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   1.2  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   4.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   6.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   6.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   8.3  

>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score =  148 bits (358), Expect = 1e-36
 Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 4/258 (1%)
 Frame = -2

Query: 894 ALNDLLKTRNVXDLF*SKRIFKFIS*KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIR 715
           ALN LL +R + D      +  + + +L +  T S   + +E++VY+ I+ +GN+GIW +
Sbjct: 48  ALNILL-SRRLLDPLRQGNVLVYRAVRLDEAKTVST-MEGDEQIVYSFIKNSGNEGIWRK 105

Query: 714 DIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQ 535
            + +R+NL  + + + LK+LESK ++K++K V    +K+YMLY+L P   LTGG W+ DQ
Sbjct: 106 TLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQ 165

Query: 534 DFESEFVDVLNVQCHRFLSQRADNMRNNPRGP--VFG-RTQAYATATEVQKYITDLGISK 364
           + + EF++ L    +R++  ++   +    GP  V+G     Y TA ++  ++    I+K
Sbjct: 166 ELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITK 225

Query: 363 XXXXXXXXXXXXXXXVYDGKVEKSVFPDGSNVYRAIETLIPS-SGLVQVPCGICPLIQRC 187
                          +YDGKVEK    DG++ YRAI     +     + PCG CP+   C
Sbjct: 226 VDLSLANVISLVDVLIYDGKVEKR--SDGAS-YRAIRVNNENIDAFTESPCGNCPVSDIC 282

Query: 186 NSSGLITPQVCNYMTEWL 133
           +++  + P  C Y+ +WL
Sbjct: 283 DANSRVNPITCEYLDKWL 300


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +1

Query: 658 IFEDFSQLS-----VCKIRTDPNISNPNSFISCFFNQIIDYLFFI 777
           IFED S L         +  DPNI+ P    + F N ++DYLF I
Sbjct: 108 IFEDKSMLEWFDYFAWTVPKDPNINTPRG--ASFLNTVVDYLFLI 150


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 774  EEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKV 640
            +E + Y+LIE+A  +G+W RD+       +  ++ V  +L S  +
Sbjct: 1760 QEDIFYSLIEDAKTRGVW-RDLSANQFKNSKSISNVSTHLASNNL 1803


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 580 QVVKHINLLFRGINTFHSFYHFFTFQIFEDFSQLSVCKIRTDPNISNPNSFISCFFNQII 759
           Q ++  N  + G N+ H+ Y   T   F  F+          P +++PN+ I C     +
Sbjct: 233 QSIQQTNGFYSGHNSPHTNYSAST-PSFNHFNAAGHPTGNITPTLNSPNNGIHCHSTSAL 291

Query: 760 DYLF 771
           D LF
Sbjct: 292 DLLF 295


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +1

Query: 601 LLFRGINTFHSFYHFFTFQIFEDFSQLSVCKIR-------TDPNISNPNSFISCFFNQII 759
           ++F  I    +F H+ T++   D  ++   K R       +   +SNPN F       I 
Sbjct: 27  IMFYCILNERAFKHYKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPNKF------SIY 80

Query: 760 DYLFFIICSFXLRAYLFEF 816
            Y++F   SF    YLF++
Sbjct: 81  IYIYFFFYSFLCSPYLFKY 99


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -2

Query: 783 ADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKK 604
           ADN+E VV  +I+ +      + D +   +LA   +  +LK ++  K +  +  +   K 
Sbjct: 165 ADNDEAVVLRVIDPSSKLAEDLSDEQSYRSLAEHIMAGILKKVDDDKAVSIIVELVVGKP 224

Query: 603 KVYMLYNL---EPDRSLTG 556
           +  +L  +    PD  + G
Sbjct: 225 QDMILRTIHVYSPDSLIVG 243


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -2

Query: 735 NKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTG 556
           N  I+ +++ + S   + +    L N ES++    ++ +    ++  +LY L P+  L  
Sbjct: 253 NAKIFNKELLLNSANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQY 312

Query: 555 GAWYQDQDFES 523
            AW    DF S
Sbjct: 313 TAWLSKVDFSS 323


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 703 DPNISNPNSFISCFFNQIIDYLFF 774
           DP++S P   +SC     I ++FF
Sbjct: 282 DPSVSKPQEILSCLSQIPIKFIFF 305


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -2

Query: 645 KVIKAVKCVNASKKKVYMLYNL 580
           K+IK ++C+ +   ++Y+LY++
Sbjct: 755 KLIKLIECMESKSDQIYLLYDV 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,205
Number of Sequences: 5004
Number of extensions: 65410
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)