Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05r
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0683 - 23490215-23490997                                         89   3e-18
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031     29   3.8  
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542...    28   8.7  

>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 1/215 (0%)
 Frame = -2

Query: 771 EKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYM 592
           E+ +Y L+   G+KG+   +IRI++ +  + LTK L+ L SK V+K V  V+   +K+YM
Sbjct: 54  ERPIYKLVFAGGDKGMSQTEIRIKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYM 113

Query: 591 LYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMRNNPRGPVFGRTQAYA 412
              ++P   +TGG WY++   +S+ V     +C   + +       +    +       A
Sbjct: 114 DVRIDPSPEITGGTWYRNGQLDSDAVASARRRCLDQIDKLGVATAESIHEGISRECSNLA 173

Query: 411 TATE-VQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFPDGSNVYRAIETLIPSS 235
            +TE V+  +  + + +               +  G+V    +  G  V   +       
Sbjct: 174 YSTEQVRDILRTMALDREVEEVRSTGAGEFGDLRAGRV---CYRRGGPVQGGM------- 223

Query: 234 GLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
            + ++PCG+CP I  C+  G+I+P  C Y  +WL+
Sbjct: 224 -MERIPCGVCPRIDECSPDGVISPSTCVYYKKWLQ 257


>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
          Length = 538

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 810 KQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKN 658
           K I+++S+  + +EK++  L+E+ GN G+ +  I     L  T   +++ N
Sbjct: 148 KDIASRSRN-EEKEKIIKILVEQEGNGGLMVLPIVGMGGLGKTTFVQLIYN 197


>05_07_0124 -
           27852840-27853571,27853726-27853769,27854224-27854272,
           27854753-27854857,27855257-27855366,27857165-27857823,
           27858355-27858572
          Length = 638

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 595 INLLFRGINTFHSFYHFFTFQIFEDFSQLSVCKIRTDPNISN 720
           I+L+   ++T H+      F++ +  S++  CKI T   +S+
Sbjct: 7   IHLMHTSLDTLHTALRHSVFKLMDRHSRIGACKILTSLQLSD 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,618
Number of Sequences: 37544
Number of extensions: 351712
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)