Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18d05r
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016761-1|AAH16761.1| 275|Homo sapiens POLR3F protein protein. 266 6e-71
BC012588-1|AAH12588.1| 316|Homo sapiens polymerase (RNA) III (D... 266 6e-71
AL121893-4|CAC11110.1| 316|Homo sapiens polymerase (RNA) III (D... 266 6e-71
AK223298-1|BAD97018.1| 316|Homo sapiens DNA-directed RNA polyme... 266 7e-71
U93869-1|AAB63677.1| 317|Homo sapiens RNA polymerase III subuni... 226 7e-59
U06485-1|AAA85638.1| 660|Homo sapiens TFIIIC alpha subunit prot... 32 3.2
U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subu... 32 3.2
AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor (T... 32 3.2
>BC016761-1|AAH16761.1| 275|Homo sapiens POLR3F protein protein.
Length = 275
Score = 266 bits (653), Expect = 6e-71
Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 10/239 (4%)
Frame = -2
Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
K Q + + KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNLESKK+I
Sbjct: 36 KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLI 95
Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMR 457
KAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL +A+ R
Sbjct: 96 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETAR 155
Query: 456 NNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFP-- 283
+ + P+ R ++A++ EV KYI +LGISK +YDGKVE ++
Sbjct: 156 ESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAK 215
Query: 282 -------DG-SNVYRAIETLIPSSGLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
DG +YRA+ +IP +GLV+ PCG+CP+ C+ G I+P C YMTEWLE
Sbjct: 216 EGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLE 274
>BC012588-1|AAH12588.1| 316|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide F, 39 kDa protein.
Length = 316
Score = 266 bits (653), Expect = 6e-71
Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 10/239 (4%)
Frame = -2
Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
K Q + + KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNLESKK+I
Sbjct: 77 KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLI 136
Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMR 457
KAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL +A+ R
Sbjct: 137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETAR 196
Query: 456 NNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFP-- 283
+ + P+ R ++A++ EV KYI +LGISK +YDGKVE ++
Sbjct: 197 ESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAK 256
Query: 282 -------DG-SNVYRAIETLIPSSGLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
DG +YRA+ +IP +GLV+ PCG+CP+ C+ G I+P C YMTEWLE
Sbjct: 257 EGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLE 315
>AL121893-4|CAC11110.1| 316|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide F, 39 kDa protein.
Length = 316
Score = 266 bits (653), Expect = 6e-71
Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 10/239 (4%)
Frame = -2
Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
K Q + + KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNLESKK+I
Sbjct: 77 KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLI 136
Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMR 457
KAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL +A+ R
Sbjct: 137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETAR 196
Query: 456 NNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFP-- 283
+ + P+ R ++A++ EV KYI +LGISK +YDGKVE ++
Sbjct: 197 ESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAK 256
Query: 282 -------DG-SNVYRAIETLIPSSGLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
DG +YRA+ +IP +GLV+ PCG+CP+ C+ G I+P C YMTEWLE
Sbjct: 257 EGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLE 315
>AK223298-1|BAD97018.1| 316|Homo sapiens DNA-directed RNA
polymerase III 39 kDa polypeptide F variant protein.
Length = 316
Score = 266 bits (652), Expect = 7e-71
Identities = 127/239 (53%), Positives = 166/239 (69%), Gaps = 10/239 (4%)
Frame = -2
Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
K Q + + KG+DN+EK+VY +IE+AGNKGIW RD+R +SNL T++ K+LKNLESKK+I
Sbjct: 77 KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLI 136
Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMR 457
KAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL +A+ R
Sbjct: 137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETAR 196
Query: 456 NNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFP-- 283
+ + P+ R ++A++ EV KYI +LGISK +YDGKVE ++
Sbjct: 197 ESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAK 256
Query: 282 -------DG-SNVYRAIETLIPSSGLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
DG +YRA+ +IP +GLV+ PCG+CP+ C+ G I+P C YMTEWLE
Sbjct: 257 EGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLE 315
>U93869-1|AAB63677.1| 317|Homo sapiens RNA polymerase III subunit
protein.
Length = 317
Score = 226 bits (553), Expect = 7e-59
Identities = 117/240 (48%), Positives = 152/240 (63%), Gaps = 11/240 (4%)
Frame = -2
Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
K Q + + KG+DN+EK+VY +IE+AGNKGIW RDIR +SNL T++ K+LKNLESKK+I
Sbjct: 77 KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLI 136
Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRFLSQRADNMR 457
KAVK V ASKKKVYMLYNL+PDRS+TGGAWY DQDFESEFV+VLN QC +FL +A+ R
Sbjct: 137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETAR 196
Query: 456 NNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFPD- 280
+ + P+ R ++A++ EV KYI +LGISK +YDGKVE ++
Sbjct: 197 ESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIACK 256
Query: 279 ---------GSNVYRAIETLIPSSGL-VQVPCGICPLIQRCNSSGLITPQVCNYMTEWLE 130
+ ++ PS P P+ C+ G I+P C YMTEWLE
Sbjct: 257 RRHSWQCRWTHETVQGSQSNHPSHRFGPGHPVDSAPVFDDCHEGGEISPSNCIYMTEWLE 316
>U06485-1|AAA85638.1| 660|Homo sapiens TFIIIC alpha subunit
protein.
Length = 660
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 759 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 634
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 305 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 346
>U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subunit
protein.
Length = 2109
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 759 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 634
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 373 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 414
>AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor
(TFIIIC) alpha chain, partial protein.
Length = 1857
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 759 YNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIK 634
Y+LIE G KGI +IR+ N+ + + + L+ KV+K
Sbjct: 121 YDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,151,577
Number of Sequences: 237096
Number of extensions: 2047613
Number of successful extensions: 4327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4318
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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