Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18d05r
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...   153   2e-37
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical...    29   5.9  

>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score =  153 bits (371), Expect = 2e-37
 Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 1/229 (0%)
 Frame = -2

Query: 816 KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVI 637
           +LK  +++      EE+V+Y+LIEE+  +GIWI+++R  S L   QL K LK+LE+KK+I
Sbjct: 70  RLKVNTSEQIAGTEEEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLKSLETKKLI 129

Query: 636 KAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLNVQCHRF-LSQRADNM 460
           K +K V  + +K Y+L+++EPD SLTGG +Y DQ  +SE ++ L   C  +  S+R   +
Sbjct: 130 KTIKAVGTT-RKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAI 188

Query: 459 RNNPRGPVFGRTQAYATATEVQKYITDLGISKXXXXXXXXXXXXXXXVYDGKVEKSVFPD 280
             NP      R  +Y    E+ ++IT+  +                 V DG +E+    D
Sbjct: 189 DENPNNIQMQREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIERRA--D 246

Query: 279 GSNVYRAIETLIPSSGLVQVPCGICPLIQRCNSSGLITPQVCNYMTEWL 133
           G    RA       S LV VPC ICP+++ C    +I+PQ C+YM  WL
Sbjct: 247 GK--IRACPPRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 580 QVVKHINLLFRGINTFHSFYHFFTFQIFEDFSQLS 684
           Q  KH+ LL R +    S  + FT ++  DF++LS
Sbjct: 430 QSAKHVKLLLRKVQALESIRNAFTSKVINDFNKLS 464


>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 589 KHINLLFRGINTFHSFY-HFFTFQIFEDFSQLSVCKIRTDPNISNPNSFISCFFNQIIDY 765
           + I   F  +N    F  +F TF  F D + + + K   +   +   SF+  FF  ++ Y
Sbjct: 72  EEIQRKFENVNVTMGFIINFTTFFYFLD-AHIGLYKKMFEKEATK--SFMLVFFTMVVAY 128

Query: 766 LFFIICSFXLRAYLFEFS 819
           + FII  F     LF++S
Sbjct: 129 ICFIIPEFTHHGNLFQYS 146


>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = -2

Query: 837 IFKFIS*KLKQISTQSKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKN 658
           IFKFI   +  ++  S  A  E+KV+ N +  A  +  +   I   +    T+LT+  + 
Sbjct: 317 IFKFIDTSIADLTYGSPSAFCEQKVI-NFLPRAALRAFYRNFISKENRKKITKLTEATQ- 374

Query: 657 LESKKVIKAVKCVNASKKKVYM 592
           ++  K+I A   ++   KK+ M
Sbjct: 375 VQLLKIIGATDWMSIKSKKIAM 396


>AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E7.1 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 489 RFLSQRADN-MRNNPRGPVFGRTQAYATATEVQKYITDLGI 370
           R L ++  N ++N   GP+FGR Q    A   + Y  ++ +
Sbjct: 124 RPLIEKTSNILKNGAEGPIFGRNQLQKLANGFENYTNEISV 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,147
Number of Sequences: 27780
Number of extensions: 349491
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)